miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23856 3' -58.9 NC_005261.1 + 33010 0.7 0.480531
Target:  5'- cGGGGaAGggGG-GAGGGGGGCGCcGAu -3'
miRNA:   3'- -UCCC-UCuaUCaCUCUCCCCGCGcCUu -5'
23856 3' -58.9 NC_005261.1 + 27236 0.7 0.490043
Target:  5'- aAGGGGGAggcgccuggGGUGGGGcGGGGUguGCGGGc -3'
miRNA:   3'- -UCCCUCUa--------UCACUCU-CCCCG--CGCCUu -5'
23856 3' -58.9 NC_005261.1 + 92718 0.7 0.509321
Target:  5'- cGGGAGcgGGagcggGAGcGGGGCGgGGAc -3'
miRNA:   3'- uCCCUCuaUCa----CUCuCCCCGCgCCUu -5'
23856 3' -58.9 NC_005261.1 + 39718 0.69 0.527924
Target:  5'- aGGGGAGggGGUuuGGGGGGCgggugccccagucGCGGAu -3'
miRNA:   3'- -UCCCUCuaUCAcuCUCCCCG-------------CGCCUu -5'
23856 3' -58.9 NC_005261.1 + 32969 0.69 0.52891
Target:  5'- cGGGAGGcGG-GAGAGGaGGgacCGCGGAGg -3'
miRNA:   3'- uCCCUCUaUCaCUCUCC-CC---GCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 24134 0.68 0.598287
Target:  5'- uGGGGGcugGGUGGGcGGGGCucaccugGCGGGAu -3'
miRNA:   3'- uCCCUCua-UCACUCuCCCCG-------CGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 43792 0.68 0.599307
Target:  5'- gAGGGcgccGcgGGUGAG-GGGGCGcCGGGc -3'
miRNA:   3'- -UCCCu---CuaUCACUCuCCCCGC-GCCUu -5'
23856 3' -58.9 NC_005261.1 + 1004 0.68 0.609514
Target:  5'- cGGGGGcgGG-GGGcGGGGgGCGGGu -3'
miRNA:   3'- uCCCUCuaUCaCUCuCCCCgCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 90131 0.68 0.609514
Target:  5'- cGGcGAGGgcgAG-GAGGGGGGCGaUGGGGa -3'
miRNA:   3'- uCC-CUCUa--UCaCUCUCCCCGC-GCCUU- -5'
23856 3' -58.9 NC_005261.1 + 13713 0.68 0.609514
Target:  5'- uGGGGGcGggGGUGGGGGuGGGgGUGGGc -3'
miRNA:   3'- -UCCCU-CuaUCACUCUC-CCCgCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 22982 0.68 0.619738
Target:  5'- cGGGAGGaggcggcggAGgaaGAGGGGGGCcCGGAGg -3'
miRNA:   3'- uCCCUCUa--------UCa--CUCUCCCCGcGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 15038 0.68 0.629971
Target:  5'- cGGGGGcGUAGcGGGGGGGGUcggggucgcgGCGGGGu -3'
miRNA:   3'- uCCCUC-UAUCaCUCUCCCCG----------CGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 22567 0.68 0.629971
Target:  5'- cGGGGAGGg---GAGGGGGagaGCGgCGGAGg -3'
miRNA:   3'- -UCCCUCUaucaCUCUCCC---CGC-GCCUU- -5'
23856 3' -58.9 NC_005261.1 + 39 0.68 0.634066
Target:  5'- cGGGGGGGUGuuuuuUGGGGGGGggccgaaaucggcgcGCGCGGGGg -3'
miRNA:   3'- -UCCCUCUAUc----ACUCUCCC---------------CGCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 96858 0.67 0.660649
Target:  5'- cGGGGGGcuc---GGGGGGCGCGGGu -3'
miRNA:   3'- uCCCUCUaucacuCUCCCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 56121 0.67 0.685054
Target:  5'- cGGGAGcgcgccgcagGGcGGGGGGCGCGGGc -3'
miRNA:   3'- uCCCUCuauca-----CU-CUCCCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 7188 0.67 0.69112
Target:  5'- aGGGGGGAg---GGGGGGGuGCGCGu-- -3'
miRNA:   3'- -UCCCUCUaucaCUCUCCC-CGCGCcuu -5'
23856 3' -58.9 NC_005261.1 + 128889 0.67 0.69112
Target:  5'- cGGGGGccgGGUGGGAGgcGGGCGUcGAAg -3'
miRNA:   3'- uCCCUCua-UCACUCUC--CCCGCGcCUU- -5'
23856 3' -58.9 NC_005261.1 + 28644 0.67 0.70119
Target:  5'- cGGGGGAgAGUGAcGAGGccGGCGgGGc- -3'
miRNA:   3'- uCCCUCUaUCACU-CUCC--CCGCgCCuu -5'
23856 3' -58.9 NC_005261.1 + 50596 0.66 0.711203
Target:  5'- cGGGGAGGgcaGG-GAGAcGGGGCGCc--- -3'
miRNA:   3'- -UCCCUCUa--UCaCUCU-CCCCGCGccuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.