miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23856 3' -58.9 NC_005261.1 + 138174 0.77 0.193627
Target:  5'- gGGGGAGGgagAGgGGGGGaGGGCGCGGGc -3'
miRNA:   3'- -UCCCUCUa--UCaCUCUC-CCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 137723 0.66 0.725105
Target:  5'- cGGGGGGUGuuuuuUGGGGGGGggccgaaaucggcgcGCGCGGGGg -3'
miRNA:   3'- uCCCUCUAUc----ACUCUCCC---------------CGCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 128889 0.67 0.69112
Target:  5'- cGGGGGccgGGUGGGAGgcGGGCGUcGAAg -3'
miRNA:   3'- uCCCUCua-UCACUCUC--CCCGCGcCUU- -5'
23856 3' -58.9 NC_005261.1 + 111083 0.66 0.721148
Target:  5'- gAGGGcc-UGGUGuGGGGGGC-CGGGGa -3'
miRNA:   3'- -UCCCucuAUCACuCUCCCCGcGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 98382 0.66 0.760072
Target:  5'- cGGGcGcaAUAccggcGUGGGGGcGGGCGCGGAc -3'
miRNA:   3'- uCCCuC--UAU-----CACUCUC-CCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 98354 0.66 0.760072
Target:  5'- cGGGGGc----GGGGGuGGGCGCGGGc -3'
miRNA:   3'- uCCCUCuaucaCUCUC-CCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 97986 0.79 0.14283
Target:  5'- cGGGGAGAgugaAGUGGGAGGcGGCGgGGGc -3'
miRNA:   3'- -UCCCUCUa---UCACUCUCC-CCGCgCCUu -5'
23856 3' -58.9 NC_005261.1 + 97627 0.66 0.721148
Target:  5'- gGGcGGAGcgGGcG-GAGcGGGCGCGGGu -3'
miRNA:   3'- -UC-CCUCuaUCaCuCUC-CCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 96858 0.67 0.660649
Target:  5'- cGGGGGGcuc---GGGGGGCGCGGGu -3'
miRNA:   3'- uCCCUCUaucacuCUCCCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 92718 0.7 0.509321
Target:  5'- cGGGAGcgGGagcggGAGcGGGGCGgGGAc -3'
miRNA:   3'- uCCCUCuaUCa----CUCuCCCCGCgCCUu -5'
23856 3' -58.9 NC_005261.1 + 90167 0.72 0.374393
Target:  5'- cGGGGAGGcGGaGGGGGGGGaCGgGGAGg -3'
miRNA:   3'- -UCCCUCUaUCaCUCUCCCC-GCgCCUU- -5'
23856 3' -58.9 NC_005261.1 + 90131 0.68 0.609514
Target:  5'- cGGcGAGGgcgAG-GAGGGGGGCGaUGGGGa -3'
miRNA:   3'- uCC-CUCUa--UCaCUCUCCCCGC-GCCUU- -5'
23856 3' -58.9 NC_005261.1 + 87861 0.76 0.241527
Target:  5'- aGGGGAGAaAGaGAGAGGuggcggagagaGGCGCGGAGa -3'
miRNA:   3'- -UCCCUCUaUCaCUCUCC-----------CCGCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 84108 0.78 0.162323
Target:  5'- gGGGcGGGAUGGgGAGGGGGGCaGCGGGc -3'
miRNA:   3'- -UCC-CUCUAUCaCUCUCCCCG-CGCCUu -5'
23856 3' -58.9 NC_005261.1 + 78461 0.75 0.252825
Target:  5'- gAGGGGGAUGGUGGGGGcgaggggggaaucGGGCgaaGCGGAc -3'
miRNA:   3'- -UCCCUCUAUCACUCUC-------------CCCG---CGCCUu -5'
23856 3' -58.9 NC_005261.1 + 74923 0.66 0.731016
Target:  5'- gGGGGAGGgcgAG-GAcGGGGacugcGGCGCGGGc -3'
miRNA:   3'- -UCCCUCUa--UCaCU-CUCC-----CCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 73180 0.66 0.733961
Target:  5'- cGGGGGGAgGGUGcacacgacgagguugGccccgggcgccucGAGGGGCGCGGu- -3'
miRNA:   3'- -UCCCUCUaUCAC---------------U-------------CUCCCCGCGCCuu -5'
23856 3' -58.9 NC_005261.1 + 69930 0.73 0.327611
Target:  5'- cAGGGGGuggGGUGGGAgccGGGGauaGCGGAGg -3'
miRNA:   3'- -UCCCUCua-UCACUCU---CCCCg--CGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 57178 0.72 0.407138
Target:  5'- gAGGGAGuggGGUcggcgggaaggggGGGGGGGGCGCGcGGGu -3'
miRNA:   3'- -UCCCUCua-UCA-------------CUCUCCCCGCGC-CUU- -5'
23856 3' -58.9 NC_005261.1 + 56121 0.67 0.685054
Target:  5'- cGGGAGcgcgccgcagGGcGGGGGGCGCGGGc -3'
miRNA:   3'- uCCCUCuauca-----CU-CUCCCCGCGCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.