Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23856 | 3' | -58.9 | NC_005261.1 | + | 138174 | 0.77 | 0.193627 |
Target: 5'- gGGGGAGGgagAGgGGGGGaGGGCGCGGGc -3' miRNA: 3'- -UCCCUCUa--UCaCUCUC-CCCGCGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 137723 | 0.66 | 0.725105 |
Target: 5'- cGGGGGGUGuuuuuUGGGGGGGggccgaaaucggcgcGCGCGGGGg -3' miRNA: 3'- uCCCUCUAUc----ACUCUCCC---------------CGCGCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 128889 | 0.67 | 0.69112 |
Target: 5'- cGGGGGccgGGUGGGAGgcGGGCGUcGAAg -3' miRNA: 3'- uCCCUCua-UCACUCUC--CCCGCGcCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 111083 | 0.66 | 0.721148 |
Target: 5'- gAGGGcc-UGGUGuGGGGGGC-CGGGGa -3' miRNA: 3'- -UCCCucuAUCACuCUCCCCGcGCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 98382 | 0.66 | 0.760072 |
Target: 5'- cGGGcGcaAUAccggcGUGGGGGcGGGCGCGGAc -3' miRNA: 3'- uCCCuC--UAU-----CACUCUC-CCCGCGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 98354 | 0.66 | 0.760072 |
Target: 5'- cGGGGGc----GGGGGuGGGCGCGGGc -3' miRNA: 3'- uCCCUCuaucaCUCUC-CCCGCGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 97986 | 0.79 | 0.14283 |
Target: 5'- cGGGGAGAgugaAGUGGGAGGcGGCGgGGGc -3' miRNA: 3'- -UCCCUCUa---UCACUCUCC-CCGCgCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 97627 | 0.66 | 0.721148 |
Target: 5'- gGGcGGAGcgGGcG-GAGcGGGCGCGGGu -3' miRNA: 3'- -UC-CCUCuaUCaCuCUC-CCCGCGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 96858 | 0.67 | 0.660649 |
Target: 5'- cGGGGGGcuc---GGGGGGCGCGGGu -3' miRNA: 3'- uCCCUCUaucacuCUCCCCGCGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 92718 | 0.7 | 0.509321 |
Target: 5'- cGGGAGcgGGagcggGAGcGGGGCGgGGAc -3' miRNA: 3'- uCCCUCuaUCa----CUCuCCCCGCgCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 90167 | 0.72 | 0.374393 |
Target: 5'- cGGGGAGGcGGaGGGGGGGGaCGgGGAGg -3' miRNA: 3'- -UCCCUCUaUCaCUCUCCCC-GCgCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 90131 | 0.68 | 0.609514 |
Target: 5'- cGGcGAGGgcgAG-GAGGGGGGCGaUGGGGa -3' miRNA: 3'- uCC-CUCUa--UCaCUCUCCCCGC-GCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 87861 | 0.76 | 0.241527 |
Target: 5'- aGGGGAGAaAGaGAGAGGuggcggagagaGGCGCGGAGa -3' miRNA: 3'- -UCCCUCUaUCaCUCUCC-----------CCGCGCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 84108 | 0.78 | 0.162323 |
Target: 5'- gGGGcGGGAUGGgGAGGGGGGCaGCGGGc -3' miRNA: 3'- -UCC-CUCUAUCaCUCUCCCCG-CGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 78461 | 0.75 | 0.252825 |
Target: 5'- gAGGGGGAUGGUGGGGGcgaggggggaaucGGGCgaaGCGGAc -3' miRNA: 3'- -UCCCUCUAUCACUCUC-------------CCCG---CGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 74923 | 0.66 | 0.731016 |
Target: 5'- gGGGGAGGgcgAG-GAcGGGGacugcGGCGCGGGc -3' miRNA: 3'- -UCCCUCUa--UCaCU-CUCC-----CCGCGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 73180 | 0.66 | 0.733961 |
Target: 5'- cGGGGGGAgGGUGcacacgacgagguugGccccgggcgccucGAGGGGCGCGGu- -3' miRNA: 3'- -UCCCUCUaUCAC---------------U-------------CUCCCCGCGCCuu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 69930 | 0.73 | 0.327611 |
Target: 5'- cAGGGGGuggGGUGGGAgccGGGGauaGCGGAGg -3' miRNA: 3'- -UCCCUCua-UCACUCU---CCCCg--CGCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 57178 | 0.72 | 0.407138 |
Target: 5'- gAGGGAGuggGGUcggcgggaaggggGGGGGGGGCGCGcGGGu -3' miRNA: 3'- -UCCCUCua-UCA-------------CUCUCCCCGCGC-CUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 56121 | 0.67 | 0.685054 |
Target: 5'- cGGGAGcgcgccgcagGGcGGGGGGCGCGGGc -3' miRNA: 3'- uCCCUCuauca-----CU-CUCCCCGCGCCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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