miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23857 3' -54 NC_005261.1 + 97702 0.72 0.676679
Target:  5'- gGGCGGUGgggagacGGCGGGUG-GCcCGGGCGg -3'
miRNA:   3'- gCCGUUAU-------CCGUCUACuCGaGCCUGC- -5'
23857 3' -54 NC_005261.1 + 97591 0.71 0.718765
Target:  5'- gGGCGGagcGGGCGGAgcGGGCggagCGGGCGg -3'
miRNA:   3'- gCCGUUa--UCCGUCUa-CUCGa---GCCUGC- -5'
23857 3' -54 NC_005261.1 + 97548 0.68 0.886525
Target:  5'- cCGGCGGUGccGGCccguccgcccgGGGUuGGCUCGGugGc -3'
miRNA:   3'- -GCCGUUAU--CCG-----------UCUAcUCGAGCCugC- -5'
23857 3' -54 NC_005261.1 + 96833 0.67 0.912666
Target:  5'- uCGGCGGUgucgAGGcCGGGgucgacgggGGGCUCGGGgGg -3'
miRNA:   3'- -GCCGUUA----UCC-GUCUa--------CUCGAGCCUgC- -5'
23857 3' -54 NC_005261.1 + 92119 0.67 0.929692
Target:  5'- -cGUGGUAGGCgaAGAauAGCUCGGGCu -3'
miRNA:   3'- gcCGUUAUCCG--UCUacUCGAGCCUGc -5'
23857 3' -54 NC_005261.1 + 84109 0.72 0.708595
Target:  5'- gGGCGggAUGGGgAGggGGGCagCGGGCGg -3'
miRNA:   3'- gCCGU--UAUCCgUCuaCUCGa-GCCUGC- -5'
23857 3' -54 NC_005261.1 + 83299 0.69 0.848634
Target:  5'- aCGGCugcgcgGGGUc-GUGcAGCUCGGGCGg -3'
miRNA:   3'- -GCCGuua---UCCGucUAC-UCGAGCCUGC- -5'
23857 3' -54 NC_005261.1 + 82651 0.67 0.908993
Target:  5'- uGGUcGUAGcacgcGCGGAUGAGCgccucgagccgcucgUCGGGCGc -3'
miRNA:   3'- gCCGuUAUC-----CGUCUACUCG---------------AGCCUGC- -5'
23857 3' -54 NC_005261.1 + 74855 0.68 0.872034
Target:  5'- gCGGCGcgccGGGCGGAgGAGg-CGGACGc -3'
miRNA:   3'- -GCCGUua--UCCGUCUaCUCgaGCCUGC- -5'
23857 3' -54 NC_005261.1 + 74515 0.66 0.953113
Target:  5'- gCGGCGccgGGGCc-AUGGcGCUUGGGCGc -3'
miRNA:   3'- -GCCGUua-UCCGucUACU-CGAGCCUGC- -5'
23857 3' -54 NC_005261.1 + 70561 0.67 0.906495
Target:  5'- -cGCA--GGGCGccgcGAaGAGCUCGGGCGc -3'
miRNA:   3'- gcCGUuaUCCGU----CUaCUCGAGCCUGC- -5'
23857 3' -54 NC_005261.1 + 69510 0.67 0.906495
Target:  5'- cCGGCGGcGGGCuGccgGAGCUggcgCGGGCGc -3'
miRNA:   3'- -GCCGUUaUCCGuCua-CUCGA----GCCUGC- -5'
23857 3' -54 NC_005261.1 + 59612 0.74 0.594308
Target:  5'- gCGGCGc--GGCGGAUGAGCgccaGGACc -3'
miRNA:   3'- -GCCGUuauCCGUCUACUCGag--CCUGc -5'
23857 3' -54 NC_005261.1 + 56971 0.68 0.893421
Target:  5'- cCGGCAGUGguucGGCAGc-GAGCgcgUGGACc -3'
miRNA:   3'- -GCCGUUAU----CCGUCuaCUCGa--GCCUGc -5'
23857 3' -54 NC_005261.1 + 50998 0.72 0.688061
Target:  5'- gCGGCGcGUGGGCGcGGcggGAGCUCGG-CGa -3'
miRNA:   3'- -GCCGU-UAUCCGU-CUa--CUCGAGCCuGC- -5'
23857 3' -54 NC_005261.1 + 44626 0.67 0.900079
Target:  5'- aGGCGugcAGGuCGGAggagGAGCUCugcgGGGCGg -3'
miRNA:   3'- gCCGUua-UCC-GUCUa---CUCGAG----CCUGC- -5'
23857 3' -54 NC_005261.1 + 35692 0.72 0.676679
Target:  5'- cCGGCGagccccgGUGGGCcGG-GGGCUCGGugGc -3'
miRNA:   3'- -GCCGU-------UAUCCGuCUaCUCGAGCCugC- -5'
23857 3' -54 NC_005261.1 + 35266 0.67 0.906495
Target:  5'- aGGCAGUGGuGguGAcGGGCggugagggaGGACGa -3'
miRNA:   3'- gCCGUUAUC-CguCUaCUCGag-------CCUGC- -5'
23857 3' -54 NC_005261.1 + 34198 0.7 0.787246
Target:  5'- gGGCcggAGGCAGAcGGcGCgUCGGACGc -3'
miRNA:   3'- gCCGuuaUCCGUCUaCU-CG-AGCCUGC- -5'
23857 3' -54 NC_005261.1 + 33609 0.67 0.929692
Target:  5'- cCGGCGc-GGGCGGcgGGGCcCGGGgGc -3'
miRNA:   3'- -GCCGUuaUCCGUCuaCUCGaGCCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.