Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23857 | 3' | -54 | NC_005261.1 | + | 98564 | 0.7 | 0.777822 |
Target: 5'- cCGGCGGgcGGCcGuccuccgcGGGCUCGGGCGa -3' miRNA: 3'- -GCCGUUauCCGuCua------CUCGAGCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 26843 | 0.7 | 0.777822 |
Target: 5'- gGGCGGUGGGCGGucaaaacggGAGCgugaaugGGGCGg -3' miRNA: 3'- gCCGUUAUCCGUCua-------CUCGag-----CCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 34198 | 0.7 | 0.787246 |
Target: 5'- gGGCcggAGGCAGAcGGcGCgUCGGACGc -3' miRNA: 3'- gCCGuuaUCCGUCUaCU-CG-AGCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 23791 | 0.7 | 0.796524 |
Target: 5'- gGGCucgccgGGGCAGGccGGCUgGGGCGg -3' miRNA: 3'- gCCGuua---UCCGUCUacUCGAgCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 23848 | 0.7 | 0.796524 |
Target: 5'- gGGCucgccgGGGCAGGccGGCUgGGGCGg -3' miRNA: 3'- gCCGuua---UCCGUCUacUCGAgCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 127909 | 0.7 | 0.796524 |
Target: 5'- gGGCc-UGGGCu--UGGGCUCGGGCc -3' miRNA: 3'- gCCGuuAUCCGucuACUCGAGCCUGc -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 123153 | 0.7 | 0.805647 |
Target: 5'- aGGCAuacgaGGGCGGGgcGGGCgcgCGGGCGu -3' miRNA: 3'- gCCGUua---UCCGUCUa-CUCGa--GCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 111466 | 0.7 | 0.811937 |
Target: 5'- cCGGCGAggccaaaaggcGGGCGGGUGAGauggcaagcgaggggCGGACGa -3' miRNA: 3'- -GCCGUUa----------UCCGUCUACUCga-------------GCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 121792 | 0.7 | 0.814607 |
Target: 5'- cCGGCGGgcUGGGCAGGgggcgcguggcUGGGCUcugCGGGCc -3' miRNA: 3'- -GCCGUU--AUCCGUCU-----------ACUCGA---GCCUGc -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 105273 | 0.69 | 0.823394 |
Target: 5'- uCGGCGGgcGGCAGcgccggcGAGCcCGGGCGc -3' miRNA: 3'- -GCCGUUauCCGUCua-----CUCGaGCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 27369 | 0.69 | 0.840415 |
Target: 5'- cCGGCGcgAGGCcGGUGGGCagGGGg- -3' miRNA: 3'- -GCCGUuaUCCGuCUACUCGagCCUgc -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 13716 | 0.69 | 0.840415 |
Target: 5'- gGGCGGggguggGGGUggGGGUGGGCUUGGcCGc -3' miRNA: 3'- gCCGUUa-----UCCG--UCUACUCGAGCCuGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 13091 | 0.69 | 0.840415 |
Target: 5'- uCGGCGGgcGGCGGGcucGGCUCGGGgGc -3' miRNA: 3'- -GCCGUUauCCGUCUac-UCGAGCCUgC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 533 | 0.69 | 0.848634 |
Target: 5'- gGGCGggGGGCAGGgcgGAcggcgGCUCGGcCGc -3' miRNA: 3'- gCCGUuaUCCGUCUa--CU-----CGAGCCuGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 138204 | 0.69 | 0.848634 |
Target: 5'- gGGCGggGGGCAGGgcgGAcggcgGCUCGGcCGc -3' miRNA: 3'- gCCGUuaUCCGUCUa--CU-----CGAGCCuGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 83299 | 0.69 | 0.848634 |
Target: 5'- aCGGCugcgcgGGGUc-GUGcAGCUCGGGCGg -3' miRNA: 3'- -GCCGuua---UCCGucUAC-UCGAGCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 128886 | 0.68 | 0.872034 |
Target: 5'- aGGCGG-GGGcCGGGUGGGaggCGGGCGu -3' miRNA: 3'- gCCGUUaUCC-GUCUACUCga-GCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 74855 | 0.68 | 0.872034 |
Target: 5'- gCGGCGcgccGGGCGGAgGAGg-CGGACGc -3' miRNA: 3'- -GCCGUua--UCCGUCUaCUCgaGCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 129606 | 0.68 | 0.879394 |
Target: 5'- gCGGCAAUuucGCGGcgGGG-UCGGGCGc -3' miRNA: 3'- -GCCGUUAuc-CGUCuaCUCgAGCCUGC- -5' |
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23857 | 3' | -54 | NC_005261.1 | + | 97548 | 0.68 | 0.886525 |
Target: 5'- cCGGCGGUGccGGCccguccgcccgGGGUuGGCUCGGugGc -3' miRNA: 3'- -GCCGUUAU--CCG-----------UCUAcUCGAGCCugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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