miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23857 3' -54 NC_005261.1 + 32077 0.67 0.900079
Target:  5'- gCGGCGcugGGGCucGggGAGC-CGGACu -3'
miRNA:   3'- -GCCGUua-UCCGu-CuaCUCGaGCCUGc -5'
23857 3' -54 NC_005261.1 + 23887 0.67 0.900079
Target:  5'- gGGCGGgccGGCuaGGGUGGGCUCgcuGGGCu -3'
miRNA:   3'- gCCGUUau-CCG--UCUACUCGAG---CCUGc -5'
23857 3' -54 NC_005261.1 + 44626 0.67 0.900079
Target:  5'- aGGCGugcAGGuCGGAggagGAGCUCugcgGGGCGg -3'
miRNA:   3'- gCCGUua-UCC-GUCUa---CUCGAG----CCUGC- -5'
23857 3' -54 NC_005261.1 + 136565 0.68 0.893421
Target:  5'- gGGCAGaAGGCgcGGGUGGGC--GGGCGc -3'
miRNA:   3'- gCCGUUaUCCG--UCUACUCGagCCUGC- -5'
23857 3' -54 NC_005261.1 + 128070 0.68 0.893421
Target:  5'- uGGCGGgcGGGCGGgcGAGCgagcggguuaaCGGGCGa -3'
miRNA:   3'- gCCGUUa-UCCGUCuaCUCGa----------GCCUGC- -5'
23857 3' -54 NC_005261.1 + 56971 0.68 0.893421
Target:  5'- cCGGCAGUGguucGGCAGc-GAGCgcgUGGACc -3'
miRNA:   3'- -GCCGUUAU----CCGUCuaCUCGa--GCCUGc -5'
23857 3' -54 NC_005261.1 + 15959 0.68 0.886525
Target:  5'- gGGCGAguggcGGGCGGGggaGGGCcCGGGCc -3'
miRNA:   3'- gCCGUUa----UCCGUCUa--CUCGaGCCUGc -5'
23857 3' -54 NC_005261.1 + 97548 0.68 0.886525
Target:  5'- cCGGCGGUGccGGCccguccgcccgGGGUuGGCUCGGugGc -3'
miRNA:   3'- -GCCGUUAU--CCG-----------UCUAcUCGAGCCugC- -5'
23857 3' -54 NC_005261.1 + 129606 0.68 0.879394
Target:  5'- gCGGCAAUuucGCGGcgGGG-UCGGGCGc -3'
miRNA:   3'- -GCCGUUAuc-CGUCuaCUCgAGCCUGC- -5'
23857 3' -54 NC_005261.1 + 74855 0.68 0.872034
Target:  5'- gCGGCGcgccGGGCGGAgGAGg-CGGACGc -3'
miRNA:   3'- -GCCGUua--UCCGUCUaCUCgaGCCUGC- -5'
23857 3' -54 NC_005261.1 + 128886 0.68 0.872034
Target:  5'- aGGCGG-GGGcCGGGUGGGaggCGGGCGu -3'
miRNA:   3'- gCCGUUaUCC-GUCUACUCga-GCCUGC- -5'
23857 3' -54 NC_005261.1 + 83299 0.69 0.848634
Target:  5'- aCGGCugcgcgGGGUc-GUGcAGCUCGGGCGg -3'
miRNA:   3'- -GCCGuua---UCCGucUAC-UCGAGCCUGC- -5'
23857 3' -54 NC_005261.1 + 138204 0.69 0.848634
Target:  5'- gGGCGggGGGCAGGgcgGAcggcgGCUCGGcCGc -3'
miRNA:   3'- gCCGUuaUCCGUCUa--CU-----CGAGCCuGC- -5'
23857 3' -54 NC_005261.1 + 533 0.69 0.848634
Target:  5'- gGGCGggGGGCAGGgcgGAcggcgGCUCGGcCGc -3'
miRNA:   3'- gCCGUuaUCCGUCUa--CU-----CGAGCCuGC- -5'
23857 3' -54 NC_005261.1 + 27369 0.69 0.840415
Target:  5'- cCGGCGcgAGGCcGGUGGGCagGGGg- -3'
miRNA:   3'- -GCCGUuaUCCGuCUACUCGagCCUgc -5'
23857 3' -54 NC_005261.1 + 13716 0.69 0.840415
Target:  5'- gGGCGGggguggGGGUggGGGUGGGCUUGGcCGc -3'
miRNA:   3'- gCCGUUa-----UCCG--UCUACUCGAGCCuGC- -5'
23857 3' -54 NC_005261.1 + 13091 0.69 0.840415
Target:  5'- uCGGCGGgcGGCGGGcucGGCUCGGGgGc -3'
miRNA:   3'- -GCCGUUauCCGUCUac-UCGAGCCUgC- -5'
23857 3' -54 NC_005261.1 + 105273 0.69 0.823394
Target:  5'- uCGGCGGgcGGCAGcgccggcGAGCcCGGGCGc -3'
miRNA:   3'- -GCCGUUauCCGUCua-----CUCGaGCCUGC- -5'
23857 3' -54 NC_005261.1 + 121792 0.7 0.814607
Target:  5'- cCGGCGGgcUGGGCAGGgggcgcguggcUGGGCUcugCGGGCc -3'
miRNA:   3'- -GCCGUU--AUCCGUCU-----------ACUCGA---GCCUGc -5'
23857 3' -54 NC_005261.1 + 111466 0.7 0.811937
Target:  5'- cCGGCGAggccaaaaggcGGGCGGGUGAGauggcaagcgaggggCGGACGa -3'
miRNA:   3'- -GCCGUUa----------UCCGUCUACUCga-------------GCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.