Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23857 | 5' | -57.4 | NC_005261.1 | + | 61951 | 0.66 | 0.845692 |
Target: 5'- gCGCGcGCC-GACCgcgUCCCCCAgccgggUCgCCg -3' miRNA: 3'- -GUGUaCGGuCUGG---AGGGGGUa-----AGgGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 9394 | 0.71 | 0.536562 |
Target: 5'- aGCucgGCUGGGCCUgCCCCCcc-CCCCa -3' miRNA: 3'- gUGua-CGGUCUGGA-GGGGGuaaGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 21884 | 0.71 | 0.536562 |
Target: 5'- gCGCccGCgGGGCCcccgCCCCCAcucucuUUCCCCc -3' miRNA: 3'- -GUGuaCGgUCUGGa---GGGGGU------AAGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 78651 | 0.71 | 0.536562 |
Target: 5'- gCGCGaGCgAGcCCUCCCCCccgUCCUCg -3' miRNA: 3'- -GUGUaCGgUCuGGAGGGGGua-AGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 87 | 0.71 | 0.556459 |
Target: 5'- gGgGUGCgGGGCgCgCCCCCGggCCCCg -3' miRNA: 3'- gUgUACGgUCUG-GaGGGGGUaaGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 137770 | 0.71 | 0.556459 |
Target: 5'- gGgGUGCgGGGCgCgCCCCCGggCCCCg -3' miRNA: 3'- gUgUACGgUCUG-GaGGGGGUaaGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 6450 | 0.7 | 0.596826 |
Target: 5'- gGCcgGCCGGGCUgCCCgCAcaCCCCg -3' miRNA: 3'- gUGuaCGGUCUGGaGGGgGUaaGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 6479 | 0.7 | 0.617191 |
Target: 5'- cCACc--CCAGgcGCCUCCCCCuucacccUUCCCCc -3' miRNA: 3'- -GUGuacGGUC--UGGAGGGGGu------AAGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 102467 | 0.7 | 0.617191 |
Target: 5'- gCGCAggcGCCGGACCUCCUCgGcgcgCCgCCg -3' miRNA: 3'- -GUGUa--CGGUCUGGAGGGGgUaa--GG-GG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 14388 | 0.71 | 0.526705 |
Target: 5'- cCGCAUcGCCAGACgCUUCUCUcaGUUCCUCu -3' miRNA: 3'- -GUGUA-CGGUCUG-GAGGGGG--UAAGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 4602 | 0.72 | 0.516918 |
Target: 5'- ----cGCCAGGgCUCCCCuCGgcgucggUCCCCg -3' miRNA: 3'- guguaCGGUCUgGAGGGG-GUa------AGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 6361 | 0.72 | 0.497568 |
Target: 5'- gCGCcgGuCCGGcGCCgcUCCCCCuUUCCCCc -3' miRNA: 3'- -GUGuaC-GGUC-UGG--AGGGGGuAAGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 5176 | 0.78 | 0.229438 |
Target: 5'- aGCAggGCCGGGuCCUCCUCCGggCCCCc -3' miRNA: 3'- gUGUa-CGGUCU-GGAGGGGGUaaGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 38709 | 0.78 | 0.235068 |
Target: 5'- aGCcgGCCAGGCCcgcgCCCCCAgcgCCCg -3' miRNA: 3'- gUGuaCGGUCUGGa---GGGGGUaa-GGGg -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 696 | 0.75 | 0.35696 |
Target: 5'- cCGCAUcggcGCCcc-CCUCCCCCcUUCCCCg -3' miRNA: 3'- -GUGUA----CGGucuGGAGGGGGuAAGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 939 | 0.75 | 0.35696 |
Target: 5'- ----aGCCGGGCCUCCCUCuccUCCCUc -3' miRNA: 3'- guguaCGGUCUGGAGGGGGua-AGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 16311 | 0.75 | 0.364899 |
Target: 5'- aGCGgcgGCCGGGcCCUCCCCCucgCCgCCg -3' miRNA: 3'- gUGUa--CGGUCU-GGAGGGGGuaaGG-GG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 31084 | 0.74 | 0.381139 |
Target: 5'- cCGCGUGCUGGGCCccaugCCgCCCGgcggCCCCg -3' miRNA: 3'- -GUGUACGGUCUGGa----GG-GGGUaa--GGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 10051 | 0.73 | 0.450714 |
Target: 5'- uCACcgGCCcGACCUCUCC---UCCCCu -3' miRNA: 3'- -GUGuaCGGuCUGGAGGGGguaAGGGG- -5' |
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23857 | 5' | -57.4 | NC_005261.1 | + | 37726 | 0.73 | 0.459895 |
Target: 5'- gGCccGCCGGAgC-CCCCCGUcgCCCCc -3' miRNA: 3'- gUGuaCGGUCUgGaGGGGGUAa-GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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