miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23857 5' -57.4 NC_005261.1 + 87 0.71 0.556459
Target:  5'- gGgGUGCgGGGCgCgCCCCCGggCCCCg -3'
miRNA:   3'- gUgUACGgUCUG-GaGGGGGUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 696 0.75 0.35696
Target:  5'- cCGCAUcggcGCCcc-CCUCCCCCcUUCCCCg -3'
miRNA:   3'- -GUGUA----CGGucuGGAGGGGGuAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 939 0.75 0.35696
Target:  5'- ----aGCCGGGCCUCCCUCuccUCCCUc -3'
miRNA:   3'- guguaCGGUCUGGAGGGGGua-AGGGG- -5'
23857 5' -57.4 NC_005261.1 + 3009 0.69 0.657993
Target:  5'- gCGCcgggGCUcccgcGGGCCUCCCCg--UCCCCg -3'
miRNA:   3'- -GUGua--CGG-----UCUGGAGGGGguaAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 3239 0.66 0.828476
Target:  5'- ----gGCCccGGCCUccucgucCCCCCcgUCCCCc -3'
miRNA:   3'- guguaCGGu-CUGGA-------GGGGGuaAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 4602 0.72 0.516918
Target:  5'- ----cGCCAGGgCUCCCCuCGgcgucggUCCCCg -3'
miRNA:   3'- guguaCGGUCUgGAGGGG-GUa------AGGGG- -5'
23857 5' -57.4 NC_005261.1 + 5176 0.78 0.229438
Target:  5'- aGCAggGCCGGGuCCUCCUCCGggCCCCc -3'
miRNA:   3'- gUGUa-CGGUCU-GGAGGGGGUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 5594 0.67 0.785387
Target:  5'- gCGCccGCCucgAGGCCcCCCCCucuaaCCCCu -3'
miRNA:   3'- -GUGuaCGG---UCUGGaGGGGGuaa--GGGG- -5'
23857 5' -57.4 NC_005261.1 + 6361 0.72 0.497568
Target:  5'- gCGCcgGuCCGGcGCCgcUCCCCCuUUCCCCc -3'
miRNA:   3'- -GUGuaC-GGUC-UGG--AGGGGGuAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 6450 0.7 0.596826
Target:  5'- gGCcgGCCGGGCUgCCCgCAcaCCCCg -3'
miRNA:   3'- gUGuaCGGUCUGGaGGGgGUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 6479 0.7 0.617191
Target:  5'- cCACc--CCAGgcGCCUCCCCCuucacccUUCCCCc -3'
miRNA:   3'- -GUGuacGGUC--UGGAGGGGGu------AAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 9008 0.68 0.715426
Target:  5'- cCACAuacccUGCCGGcccgauuugcaugcACCcgCCCCCcgUCCCg -3'
miRNA:   3'- -GUGU-----ACGGUC--------------UGGa-GGGGGuaAGGGg -5'
23857 5' -57.4 NC_005261.1 + 9394 0.71 0.536562
Target:  5'- aGCucgGCUGGGCCUgCCCCCcc-CCCCa -3'
miRNA:   3'- gUGua-CGGUCUGGA-GGGGGuaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 10051 0.73 0.450714
Target:  5'- uCACcgGCCcGACCUCUCC---UCCCCu -3'
miRNA:   3'- -GUGuaCGGuCUGGAGGGGguaAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 11130 0.66 0.829313
Target:  5'- aGCGUGCgccGCCUCCgCCGcucUCCCCc -3'
miRNA:   3'- gUGUACGgucUGGAGGgGGUa--AGGGG- -5'
23857 5' -57.4 NC_005261.1 + 11573 0.66 0.829313
Target:  5'- -cCAUGCCc--CUUCCCCCc--CCCCg -3'
miRNA:   3'- guGUACGGucuGGAGGGGGuaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 14388 0.71 0.526705
Target:  5'- cCGCAUcGCCAGACgCUUCUCUcaGUUCCUCu -3'
miRNA:   3'- -GUGUA-CGGUCUG-GAGGGGG--UAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 16311 0.75 0.364899
Target:  5'- aGCGgcgGCCGGGcCCUCCCCCucgCCgCCg -3'
miRNA:   3'- gUGUa--CGGUCU-GGAGGGGGuaaGG-GG- -5'
23857 5' -57.4 NC_005261.1 + 21574 0.69 0.678303
Target:  5'- aACAUgaGCCAGuACUUCaCCCgGcUCCCCg -3'
miRNA:   3'- gUGUA--CGGUC-UGGAG-GGGgUaAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 21884 0.71 0.536562
Target:  5'- gCGCccGCgGGGCCcccgCCCCCAcucucuUUCCCCc -3'
miRNA:   3'- -GUGuaCGgUCUGGa---GGGGGU------AAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.