miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23857 5' -57.4 NC_005261.1 + 22298 0.66 0.837596
Target:  5'- cCGCccGCCuccuCCUCUCUCucuUUCCCCg -3'
miRNA:   3'- -GUGuaCGGucu-GGAGGGGGu--AAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 26514 0.66 0.826794
Target:  5'- cCGC-UGCCAcGcacgcgcaccccccCCUCCCCCcUUCUCCg -3'
miRNA:   3'- -GUGuACGGUcU--------------GGAGGGGGuAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 27116 1.1 0.001536
Target:  5'- cCACAUGCCAGACCUCCCCCAUUCCCCc -3'
miRNA:   3'- -GUGUACGGUCUGGAGGGGGUAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 27271 0.67 0.766798
Target:  5'- gGCA-GCCcGGCCggCCCCCGgaccgCCCUc -3'
miRNA:   3'- gUGUaCGGuCUGGa-GGGGGUaa---GGGG- -5'
23857 5' -57.4 NC_005261.1 + 31084 0.74 0.381139
Target:  5'- cCGCGUGCUGGGCCccaugCCgCCCGgcggCCCCg -3'
miRNA:   3'- -GUGUACGGUCUGGa----GG-GGGUaa--GGGG- -5'
23857 5' -57.4 NC_005261.1 + 33260 0.68 0.718399
Target:  5'- ----cGCCGG-CCgucgcggCCCCCGU-CCCCg -3'
miRNA:   3'- guguaCGGUCuGGa------GGGGGUAaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 35330 0.68 0.698462
Target:  5'- ----gGCCGGGCCUCCCCgUGUgcaagCCCg -3'
miRNA:   3'- guguaCGGUCUGGAGGGG-GUAa----GGGg -5'
23857 5' -57.4 NC_005261.1 + 36016 0.68 0.738043
Target:  5'- cCGCG-GCCaAGGCuCUUCCCCg--CCCCu -3'
miRNA:   3'- -GUGUaCGG-UCUG-GAGGGGGuaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 37726 0.73 0.459895
Target:  5'- gGCccGCCGGAgC-CCCCCGUcgCCCCc -3'
miRNA:   3'- gUGuaCGGUCUgGaGGGGGUAa-GGGG- -5'
23857 5' -57.4 NC_005261.1 + 38138 0.66 0.837596
Target:  5'- -cCGUGCagaAGaACUUCCCCgGgaCCCCg -3'
miRNA:   3'- guGUACGg--UC-UGGAGGGGgUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 38709 0.78 0.235068
Target:  5'- aGCcgGCCAGGCCcgcgCCCCCAgcgCCCg -3'
miRNA:   3'- gUGuaCGGUCUGGa---GGGGGUaa-GGGg -5'
23857 5' -57.4 NC_005261.1 + 42556 0.66 0.820853
Target:  5'- gCAgGUGCUcuuGcCCgagCCCgCGUUCCCCg -3'
miRNA:   3'- -GUgUACGGu--CuGGa--GGGgGUAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 48608 0.67 0.794481
Target:  5'- cCGCGUGCgCGGccgcgcCCagCCCCAcgCCCCg -3'
miRNA:   3'- -GUGUACG-GUCu-----GGagGGGGUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 52077 0.68 0.718399
Target:  5'- gGCG-GCCccuuuuuccCCUCCCCCcUUCCCCc -3'
miRNA:   3'- gUGUaCGGucu------GGAGGGGGuAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 55551 0.67 0.794481
Target:  5'- ----aGCCAGGCC-CCgCCCAcgCCCa -3'
miRNA:   3'- guguaCGGUCUGGaGG-GGGUaaGGGg -5'
23857 5' -57.4 NC_005261.1 + 60856 0.67 0.794481
Target:  5'- uCGCGcGCCGGGCCgagCCCgcgCCGUguUCaCCCg -3'
miRNA:   3'- -GUGUaCGGUCUGGa--GGG---GGUA--AG-GGG- -5'
23857 5' -57.4 NC_005261.1 + 61668 0.69 0.688406
Target:  5'- aGCG-GCCAGuCUuuUCCCCCg--CCCCg -3'
miRNA:   3'- gUGUaCGGUCuGG--AGGGGGuaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 61709 0.68 0.738043
Target:  5'- cCGCccGCCcGuguGCCcCCCCCAU-CCCCg -3'
miRNA:   3'- -GUGuaCGGuC---UGGaGGGGGUAaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 61951 0.66 0.845692
Target:  5'- gCGCGcGCC-GACCgcgUCCCCCAgccgggUCgCCg -3'
miRNA:   3'- -GUGUaCGGuCUGG---AGGGGGUa-----AGgGG- -5'
23857 5' -57.4 NC_005261.1 + 65554 0.67 0.765855
Target:  5'- gCGCGUGCCAGGCgUCCaugaagugccgcaCCUggUCCgCg -3'
miRNA:   3'- -GUGUACGGUCUGgAGG-------------GGGuaAGGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.