miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23857 5' -57.4 NC_005261.1 + 137770 0.71 0.556459
Target:  5'- gGgGUGCgGGGCgCgCCCCCGggCCCCg -3'
miRNA:   3'- gUgUACGgUCUG-GaGGGGGUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 137587 0.68 0.738043
Target:  5'- aGCGcGCC---CCUCCCCCA--CCCCg -3'
miRNA:   3'- gUGUaCGGucuGGAGGGGGUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 133977 0.66 0.829313
Target:  5'- cCGCAacgacGCC-GACCUCCUCag--CCCCg -3'
miRNA:   3'- -GUGUa----CGGuCUGGAGGGGguaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 129286 0.67 0.785387
Target:  5'- cCGCGccGCCccGCCcgCCCCCGgcgCCCCg -3'
miRNA:   3'- -GUGUa-CGGucUGGa-GGGGGUaa-GGGG- -5'
23857 5' -57.4 NC_005261.1 + 121278 0.68 0.728263
Target:  5'- gGCG-GCCGccccGGCCUCgCUCUcgUCCCCg -3'
miRNA:   3'- gUGUaCGGU----CUGGAG-GGGGuaAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 119725 0.67 0.776156
Target:  5'- gGCGUGCCcaaccCCUUCCCgCGcgCCCCg -3'
miRNA:   3'- gUGUACGGucu--GGAGGGG-GUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 119304 0.67 0.794481
Target:  5'- aGCGgaggGCgAGGCCUCgCCCucgCCCUu -3'
miRNA:   3'- gUGUa---CGgUCUGGAGgGGGuaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 106480 0.68 0.747732
Target:  5'- ----cGCCGGG-CUCCCCUcgUCgCCCu -3'
miRNA:   3'- guguaCGGUCUgGAGGGGGuaAG-GGG- -5'
23857 5' -57.4 NC_005261.1 + 105020 0.66 0.828476
Target:  5'- ----cGCCAGGgcgguguCCUCUCCCGcUCCCa -3'
miRNA:   3'- guguaCGGUCU-------GGAGGGGGUaAGGGg -5'
23857 5' -57.4 NC_005261.1 + 104961 0.7 0.626374
Target:  5'- gCGCAgGCCGcaacagcGuCCUCCCCCg--CCCCg -3'
miRNA:   3'- -GUGUaCGGU-------CuGGAGGGGGuaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 103086 0.68 0.728263
Target:  5'- cCGCGaagGCCGGGCCcagCCCggCCAgcgCCCCc -3'
miRNA:   3'- -GUGUa--CGGUCUGGa--GGG--GGUaa-GGGG- -5'
23857 5' -57.4 NC_005261.1 + 102467 0.7 0.617191
Target:  5'- gCGCAggcGCCGGACCUCCUCgGcgcgCCgCCg -3'
miRNA:   3'- -GUGUa--CGGUCUGGAGGGGgUaa--GG-GG- -5'
23857 5' -57.4 NC_005261.1 + 88112 0.68 0.698462
Target:  5'- cCGCGcGCCGG-CUUCUucaaCCCAUUCCUCg -3'
miRNA:   3'- -GUGUaCGGUCuGGAGG----GGGUAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 87995 0.68 0.698462
Target:  5'- ----cGCCGGcuCCUCCCCCGgcgggCCCg -3'
miRNA:   3'- guguaCGGUCu-GGAGGGGGUaa---GGGg -5'
23857 5' -57.4 NC_005261.1 + 82454 0.66 0.820853
Target:  5'- nCGCGccGCCGuuGCCgCCCCCGgccccgUCCCCg -3'
miRNA:   3'- -GUGUa-CGGUc-UGGaGGGGGUa-----AGGGG- -5'
23857 5' -57.4 NC_005261.1 + 82420 0.68 0.728263
Target:  5'- gCGCcgGCCccGCCguccgcgCCCCCGgccggCCCCg -3'
miRNA:   3'- -GUGuaCGGucUGGa------GGGGGUaa---GGGG- -5'
23857 5' -57.4 NC_005261.1 + 81392 0.68 0.72728
Target:  5'- ----cGCCGGgcucccgGCCUCCCCagcUCCCCc -3'
miRNA:   3'- guguaCGGUC-------UGGAGGGGguaAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 78651 0.71 0.536562
Target:  5'- gCGCGaGCgAGcCCUCCCCCccgUCCUCg -3'
miRNA:   3'- -GUGUaCGgUCuGGAGGGGGua-AGGGG- -5'
23857 5' -57.4 NC_005261.1 + 78097 0.67 0.776156
Target:  5'- gCGCcgGcCCAGGCCccggCCCCgg--CCCCa -3'
miRNA:   3'- -GUGuaC-GGUCUGGa---GGGGguaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 77927 0.66 0.845692
Target:  5'- uGCggGCCGG-CUaCCCCUAcggCCCCg -3'
miRNA:   3'- gUGuaCGGUCuGGaGGGGGUaa-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.