miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23857 5' -57.4 NC_005261.1 + 119725 0.67 0.776156
Target:  5'- gGCGUGCCcaaccCCUUCCCgCGcgCCCCg -3'
miRNA:   3'- gUGUACGGucu--GGAGGGG-GUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 68819 0.67 0.766798
Target:  5'- cCACAacGCCuGGGCCguggcggcCCCCCcgUCCCg -3'
miRNA:   3'- -GUGUa-CGG-UCUGGa-------GGGGGuaAGGGg -5'
23857 5' -57.4 NC_005261.1 + 27271 0.67 0.766798
Target:  5'- gGCA-GCCcGGCCggCCCCCGgaccgCCCUc -3'
miRNA:   3'- gUGUaCGGuCUGGa-GGGGGUaa---GGGG- -5'
23857 5' -57.4 NC_005261.1 + 65554 0.67 0.765855
Target:  5'- gCGCGUGCCAGGCgUCCaugaagugccgcaCCUggUCCgCg -3'
miRNA:   3'- -GUGUACGGUCUGgAGG-------------GGGuaAGGgG- -5'
23857 5' -57.4 NC_005261.1 + 66043 0.68 0.747732
Target:  5'- gGCG-GCCAcGGCCagCCCCGggcccgcggUCCCCu -3'
miRNA:   3'- gUGUaCGGU-CUGGagGGGGUa--------AGGGG- -5'
23857 5' -57.4 NC_005261.1 + 106480 0.68 0.747732
Target:  5'- ----cGCCGGG-CUCCCCUcgUCgCCCu -3'
miRNA:   3'- guguaCGGUCUgGAGGGGGuaAG-GGG- -5'
23857 5' -57.4 NC_005261.1 + 137587 0.68 0.738043
Target:  5'- aGCGcGCC---CCUCCCCCA--CCCCg -3'
miRNA:   3'- gUGUaCGGucuGGAGGGGGUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 61709 0.68 0.738043
Target:  5'- cCGCccGCCcGuguGCCcCCCCCAU-CCCCg -3'
miRNA:   3'- -GUGuaCGGuC---UGGaGGGGGUAaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 36016 0.68 0.738043
Target:  5'- cCGCG-GCCaAGGCuCUUCCCCg--CCCCu -3'
miRNA:   3'- -GUGUaCGG-UCUG-GAGGGGGuaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 103086 0.68 0.728263
Target:  5'- cCGCGaagGCCGGGCCcagCCCggCCAgcgCCCCc -3'
miRNA:   3'- -GUGUa--CGGUCUGGa--GGG--GGUaa-GGGG- -5'
23857 5' -57.4 NC_005261.1 + 121278 0.68 0.728263
Target:  5'- gGCG-GCCGccccGGCCUCgCUCUcgUCCCCg -3'
miRNA:   3'- gUGUaCGGU----CUGGAG-GGGGuaAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 82420 0.68 0.728263
Target:  5'- gCGCcgGCCccGCCguccgcgCCCCCGgccggCCCCg -3'
miRNA:   3'- -GUGuaCGGucUGGa------GGGGGUaa---GGGG- -5'
23857 5' -57.4 NC_005261.1 + 81392 0.68 0.72728
Target:  5'- ----cGCCGGgcucccgGCCUCCCCagcUCCCCc -3'
miRNA:   3'- guguaCGGUC-------UGGAGGGGguaAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 52077 0.68 0.718399
Target:  5'- gGCG-GCCccuuuuuccCCUCCCCCcUUCCCCc -3'
miRNA:   3'- gUGUaCGGucu------GGAGGGGGuAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 33260 0.68 0.718399
Target:  5'- ----cGCCGG-CCgucgcggCCCCCGU-CCCCg -3'
miRNA:   3'- guguaCGGUCuGGa------GGGGGUAaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 9008 0.68 0.715426
Target:  5'- cCACAuacccUGCCGGcccgauuugcaugcACCcgCCCCCcgUCCCg -3'
miRNA:   3'- -GUGU-----ACGGUC--------------UGGa-GGGGGuaAGGGg -5'
23857 5' -57.4 NC_005261.1 + 88112 0.68 0.698462
Target:  5'- cCGCGcGCCGG-CUUCUucaaCCCAUUCCUCg -3'
miRNA:   3'- -GUGUaCGGUCuGGAGG----GGGUAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 87995 0.68 0.698462
Target:  5'- ----cGCCGGcuCCUCCCCCGgcgggCCCg -3'
miRNA:   3'- guguaCGGUCu-GGAGGGGGUaa---GGGg -5'
23857 5' -57.4 NC_005261.1 + 35330 0.68 0.698462
Target:  5'- ----gGCCGGGCCUCCCCgUGUgcaagCCCg -3'
miRNA:   3'- guguaCGGUCUGGAGGGG-GUAa----GGGg -5'
23857 5' -57.4 NC_005261.1 + 61668 0.69 0.688406
Target:  5'- aGCG-GCCAGuCUuuUCCCCCg--CCCCg -3'
miRNA:   3'- gUGUaCGGUCuGG--AGGGGGuaaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.