miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 3' -51.4 NC_005262.1 + 52575 0.67 0.875879
Target:  5'- ---cUGUCGAGCucGgCGCGGCuCUCGAu -3'
miRNA:   3'- gauaACAGCUUG--CgGUGCCG-GAGUUc -5'
23859 3' -51.4 NC_005262.1 + 11165 0.68 0.859612
Target:  5'- uCUGcgGUCGcGCGCCACGaGCCg---- -3'
miRNA:   3'- -GAUaaCAGCuUGCGGUGC-CGGaguuc -5'
23859 3' -51.4 NC_005262.1 + 9968 0.68 0.851106
Target:  5'- -gAUUGcCGAACGUCGCGGagccgaUCGAGc -3'
miRNA:   3'- gaUAACaGCUUGCGGUGCCgg----AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 47433 0.68 0.851106
Target:  5'- -gGUUGcCGAACGCgGCGGCgccgaUCAGc -3'
miRNA:   3'- gaUAACaGCUUGCGgUGCCGg----AGUUc -5'
23859 3' -51.4 NC_005262.1 + 5243 0.68 0.851106
Target:  5'- ----cGUCG-ACGCCGCGcugauugaauGCCUCGAa -3'
miRNA:   3'- gauaaCAGCuUGCGGUGC----------CGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 58570 0.68 0.824202
Target:  5'- ----cGUCG-ACGCCACGGCgaucgugCAGGa -3'
miRNA:   3'- gauaaCAGCuUGCGGUGCCGga-----GUUC- -5'
23859 3' -51.4 NC_005262.1 + 44725 0.69 0.814803
Target:  5'- ----aGUUcaagGAGCGCgGCGGCgUCAAGg -3'
miRNA:   3'- gauaaCAG----CUUGCGgUGCCGgAGUUC- -5'
23859 3' -51.4 NC_005262.1 + 1286 0.69 0.814803
Target:  5'- ----cGUCGAACGCagCACGGCUaUCAGc -3'
miRNA:   3'- gauaaCAGCUUGCG--GUGCCGG-AGUUc -5'
23859 3' -51.4 NC_005262.1 + 42004 0.69 0.804235
Target:  5'- ----cGaCGAACGCCcgccucgaaucggGCGGCCUCAc- -3'
miRNA:   3'- gauaaCaGCUUGCGG-------------UGCCGGAGUuc -5'
23859 3' -51.4 NC_005262.1 + 31846 0.69 0.795421
Target:  5'- ---cUGUCGggUGCaCGCGGCaUCAAc -3'
miRNA:   3'- gauaACAGCuuGCG-GUGCCGgAGUUc -5'
23859 3' -51.4 NC_005262.1 + 53719 0.69 0.78546
Target:  5'- ----cGUCGAAgGCCGUGGCgCUCGAa -3'
miRNA:   3'- gauaaCAGCUUgCGGUGCCG-GAGUUc -5'
23859 3' -51.4 NC_005262.1 + 4660 0.7 0.765055
Target:  5'- cCUAUcgGUUGAACagccauGCCGCGGCCggaUCGGGc -3'
miRNA:   3'- -GAUAa-CAGCUUG------CGGUGCCGG---AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 32707 0.7 0.754635
Target:  5'- -gAUUGUCGG--GCCGCGGCUcgcccuUCAGGu -3'
miRNA:   3'- gaUAACAGCUugCGGUGCCGG------AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 45697 0.7 0.744086
Target:  5'- -aAUUGUCG-ACGCCGgCcGCUUCGAGg -3'
miRNA:   3'- gaUAACAGCuUGCGGU-GcCGGAGUUC- -5'
23859 3' -51.4 NC_005262.1 + 33380 0.7 0.744086
Target:  5'- ---gUGUCGAGCGCCguccagcgcacGCGGCucgugcuguaCUCGGGg -3'
miRNA:   3'- gauaACAGCUUGCGG-----------UGCCG----------GAGUUC- -5'
23859 3' -51.4 NC_005262.1 + 58963 0.7 0.733419
Target:  5'- ----aGUCGAAccagccggcCGCCgGCGGCCUCAc- -3'
miRNA:   3'- gauaaCAGCUU---------GCGG-UGCCGGAGUuc -5'
23859 3' -51.4 NC_005262.1 + 30999 0.7 0.726969
Target:  5'- ----cGUCGAACGCgAUGGCCggcgcgccgccggugUCGAGc -3'
miRNA:   3'- gauaaCAGCUUGCGgUGCCGG---------------AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 2175 0.71 0.711784
Target:  5'- gCUAUUGUCGGACgGCUGCgucucguaGGCUUCGAu -3'
miRNA:   3'- -GAUAACAGCUUG-CGGUG--------CCGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 21124 0.71 0.711784
Target:  5'- ----cGUgCGGGCGCCACGGCUcgCAGa -3'
miRNA:   3'- gauaaCA-GCUUGCGGUGCCGGa-GUUc -5'
23859 3' -51.4 NC_005262.1 + 39886 0.71 0.700839
Target:  5'- --cUUGcCGAACGCCuCGGCgUCGAu -3'
miRNA:   3'- gauAACaGCUUGCGGuGCCGgAGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.