Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 45697 | 0.7 | 0.744086 |
Target: 5'- -aAUUGUCG-ACGCCGgCcGCUUCGAGg -3' miRNA: 3'- gaUAACAGCuUGCGGU-GcCGGAGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 33380 | 0.7 | 0.744086 |
Target: 5'- ---gUGUCGAGCGCCguccagcgcacGCGGCucgugcuguaCUCGGGg -3' miRNA: 3'- gauaACAGCUUGCGG-----------UGCCG----------GAGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 30999 | 0.7 | 0.726969 |
Target: 5'- ----cGUCGAACGCgAUGGCCggcgcgccgccggugUCGAGc -3' miRNA: 3'- gauaaCAGCUUGCGgUGCCGG---------------AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 21124 | 0.71 | 0.711784 |
Target: 5'- ----cGUgCGGGCGCCACGGCUcgCAGa -3' miRNA: 3'- gauaaCA-GCUUGCGGUGCCGGa-GUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 39886 | 0.71 | 0.700839 |
Target: 5'- --cUUGcCGAACGCCuCGGCgUCGAu -3' miRNA: 3'- gauAACaGCUUGCGGuGCCGgAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 34648 | 0.73 | 0.589452 |
Target: 5'- ----gGUCGcGCGCCAcuCGGCCUCGu- -3' miRNA: 3'- gauaaCAGCuUGCGGU--GCCGGAGUuc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 27885 | 0.67 | 0.883626 |
Target: 5'- ----aGUCGAGCGCCAucgacacugugcCGGCCcCGu- -3' miRNA: 3'- gauaaCAGCUUGCGGU------------GCCGGaGUuc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 35072 | 0.67 | 0.891106 |
Target: 5'- ----cGUcCGGGCG-CGCGGCCUCGc- -3' miRNA: 3'- gauaaCA-GCUUGCgGUGCCGGAGUuc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 10176 | 0.67 | 0.898314 |
Target: 5'- ---aUGUCG-ACGCC-CGG-CUCGGGa -3' miRNA: 3'- gauaACAGCuUGCGGuGCCgGAGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 60447 | 0.66 | 0.930147 |
Target: 5'- uCUAg---CGA--GCCGCGGCCUCGu- -3' miRNA: 3'- -GAUaacaGCUugCGGUGCCGGAGUuc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 503 | 0.66 | 0.930147 |
Target: 5'- ----cGUCG-ACGCCGagccagcagcCGGCCgUCAAGc -3' miRNA: 3'- gauaaCAGCuUGCGGU----------GCCGG-AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 53078 | 0.66 | 0.930147 |
Target: 5'- --uUUGcggGAGCGCCggccgcgugcgcGCGGCCUCGAu -3' miRNA: 3'- gauAACag-CUUGCGG------------UGCCGGAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 50238 | 0.66 | 0.930147 |
Target: 5'- ----aG-CGGAUGCCaagcaacggucGCGGCCUCGAu -3' miRNA: 3'- gauaaCaGCUUGCGG-----------UGCCGGAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 7704 | 0.66 | 0.916385 |
Target: 5'- ---aUGUCGAuCGCCgagaaACGGCCguccgcgaucacguUCAGGa -3' miRNA: 3'- gauaACAGCUuGCGG-----UGCCGG--------------AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 35621 | 0.66 | 0.916385 |
Target: 5'- -aGUUGUCGAcggcCGCCGCGcgcaguugcgccgcGCgCUCGGGg -3' miRNA: 3'- gaUAACAGCUu---GCGGUGC--------------CG-GAGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 51905 | 0.66 | 0.911897 |
Target: 5'- --uUUGUCG--UGCCGCGGCCa---- -3' miRNA: 3'- gauAACAGCuuGCGGUGCCGGaguuc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 12668 | 0.66 | 0.911897 |
Target: 5'- ----cGUCGAGCGCCuugucgacCGGCgCgUCGAGc -3' miRNA: 3'- gauaaCAGCUUGCGGu-------GCCG-G-AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 29114 | 0.66 | 0.911897 |
Target: 5'- gCUGcgUGUcCGAACGCCagucgggauaGCGGUCgUCGAGc -3' miRNA: 3'- -GAUa-ACA-GCUUGCGG----------UGCCGG-AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 29445 | 0.66 | 0.905246 |
Target: 5'- uUGUUGUCG---GUCACGGCgUCGAu -3' miRNA: 3'- gAUAACAGCuugCGGUGCCGgAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 9365 | 0.66 | 0.905246 |
Target: 5'- ----gGUCGGcgcGCGCgGCGGCCUg--- -3' miRNA: 3'- gauaaCAGCU---UGCGgUGCCGGAguuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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