Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 2175 | 0.71 | 0.711784 |
Target: 5'- gCUAUUGUCGGACgGCUGCgucucguaGGCUUCGAu -3' miRNA: 3'- -GAUAACAGCUUG-CGGUG--------CCGGAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 15300 | 0.66 | 0.918266 |
Target: 5'- ----cGUCGAuuCGCCgcgcaugggcggGCGGCCgUCGAGc -3' miRNA: 3'- gauaaCAGCUu-GCGG------------UGCCGG-AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 52787 | 0.66 | 0.918266 |
Target: 5'- ------cCGAcCGCUACGGCCgcuUCAAGg -3' miRNA: 3'- gauaacaGCUuGCGGUGCCGG---AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 49636 | 0.66 | 0.911897 |
Target: 5'- -----cUCGGugGCCucgcgaucgGCGGCCUgCAAGg -3' miRNA: 3'- gauaacAGCUugCGG---------UGCCGGA-GUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 1440 | 0.66 | 0.905246 |
Target: 5'- ----cGUCGAGCGCaGCGuuucgaauaGCCUCAAa -3' miRNA: 3'- gauaaCAGCUUGCGgUGC---------CGGAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 41095 | 0.67 | 0.883626 |
Target: 5'- ----cGUC-AACGCCGcCGGCCacgUCGAGa -3' miRNA: 3'- gauaaCAGcUUGCGGU-GCCGG---AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 9968 | 0.68 | 0.851106 |
Target: 5'- -gAUUGcCGAACGUCGCGGagccgaUCGAGc -3' miRNA: 3'- gaUAACaGCUUGCGGUGCCgg----AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 5243 | 0.68 | 0.851106 |
Target: 5'- ----cGUCG-ACGCCGCGcugauugaauGCCUCGAa -3' miRNA: 3'- gauaaCAGCuUGCGGUGC----------CGGAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 1286 | 0.69 | 0.814803 |
Target: 5'- ----cGUCGAACGCagCACGGCUaUCAGc -3' miRNA: 3'- gauaaCAGCUUGCG--GUGCCGG-AGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 42004 | 0.69 | 0.804235 |
Target: 5'- ----cGaCGAACGCCcgccucgaaucggGCGGCCUCAc- -3' miRNA: 3'- gauaaCaGCUUGCGG-------------UGCCGGAGUuc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 31846 | 0.69 | 0.795421 |
Target: 5'- ---cUGUCGggUGCaCGCGGCaUCAAc -3' miRNA: 3'- gauaACAGCuuGCG-GUGCCGgAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 53719 | 0.69 | 0.78546 |
Target: 5'- ----cGUCGAAgGCCGUGGCgCUCGAa -3' miRNA: 3'- gauaaCAGCUUgCGGUGCCG-GAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 4660 | 0.7 | 0.765055 |
Target: 5'- cCUAUcgGUUGAACagccauGCCGCGGCCggaUCGGGc -3' miRNA: 3'- -GAUAa-CAGCUUG------CGGUGCCGG---AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 58963 | 0.7 | 0.733419 |
Target: 5'- ----aGUCGAAccagccggcCGCCgGCGGCCUCAc- -3' miRNA: 3'- gauaaCAGCUU---------GCGG-UGCCGGAGUuc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 7704 | 0.66 | 0.916385 |
Target: 5'- ---aUGUCGAuCGCCgagaaACGGCCguccgcgaucacguUCAGGa -3' miRNA: 3'- gauaACAGCUuGCGG-----UGCCGG--------------AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 50238 | 0.66 | 0.930147 |
Target: 5'- ----aG-CGGAUGCCaagcaacggucGCGGCCUCGAu -3' miRNA: 3'- gauaaCaGCUUGCGG-----------UGCCGGAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 53078 | 0.66 | 0.930147 |
Target: 5'- --uUUGcggGAGCGCCggccgcgugcgcGCGGCCUCGAu -3' miRNA: 3'- gauAACag-CUUGCGG------------UGCCGGAGUUc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 503 | 0.66 | 0.930147 |
Target: 5'- ----cGUCG-ACGCCGagccagcagcCGGCCgUCAAGc -3' miRNA: 3'- gauaaCAGCuUGCGGU----------GCCGG-AGUUC- -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 60447 | 0.66 | 0.930147 |
Target: 5'- uCUAg---CGA--GCCGCGGCCUCGu- -3' miRNA: 3'- -GAUaacaGCUugCGGUGCCGGAGUuc -5' |
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23859 | 3' | -51.4 | NC_005262.1 | + | 62765 | 1.1 | 0.002585 |
Target: 5'- cCUAUUGUCGAACGCCACGGCCUCAAGa -3' miRNA: 3'- -GAUAACAGCUUGCGGUGCCGGAGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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