Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 62765 | 1.1 | 0.002585 |
Target: 5'- cCUAUUGUCGAACGCCACGGCCUCAAGa -3' miRNA: 3'- -GAUAACAGCUUGCGGUGCCGGAGUUC- -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 10066 | 0.79 | 0.285618 |
Target: 5'- -gGUUGaagucgcguUCGAGCGCCACGGCCUuCGAc -3' miRNA: 3'- gaUAAC---------AGCUUGCGGUGCCGGA-GUUc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 7071 | 0.74 | 0.523717 |
Target: 5'- ---aUGUCGAACGCCGacGCCUCGGa -3' miRNA: 3'- gauaACAGCUUGCGGUgcCGGAGUUc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 34648 | 0.73 | 0.589452 |
Target: 5'- ----gGUCGcGCGCCAcuCGGCCUCGu- -3' miRNA: 3'- gauaaCAGCuUGCGGU--GCCGGAGUuc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 39886 | 0.71 | 0.700839 |
Target: 5'- --cUUGcCGAACGCCuCGGCgUCGAu -3' miRNA: 3'- gauAACaGCUUGCGGuGCCGgAGUUc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 21124 | 0.71 | 0.711784 |
Target: 5'- ----cGUgCGGGCGCCACGGCUcgCAGa -3' miRNA: 3'- gauaaCA-GCUUGCGGUGCCGGa-GUUc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 2175 | 0.71 | 0.711784 |
Target: 5'- gCUAUUGUCGGACgGCUGCgucucguaGGCUUCGAu -3' miRNA: 3'- -GAUAACAGCUUG-CGGUG--------CCGGAGUUc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 30999 | 0.7 | 0.726969 |
Target: 5'- ----cGUCGAACGCgAUGGCCggcgcgccgccggugUCGAGc -3' miRNA: 3'- gauaaCAGCUUGCGgUGCCGG---------------AGUUC- -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 58963 | 0.7 | 0.733419 |
Target: 5'- ----aGUCGAAccagccggcCGCCgGCGGCCUCAc- -3' miRNA: 3'- gauaaCAGCUU---------GCGG-UGCCGGAGUuc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 45697 | 0.7 | 0.744086 |
Target: 5'- -aAUUGUCG-ACGCCGgCcGCUUCGAGg -3' miRNA: 3'- gaUAACAGCuUGCGGU-GcCGGAGUUC- -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 33380 | 0.7 | 0.744086 |
Target: 5'- ---gUGUCGAGCGCCguccagcgcacGCGGCucgugcuguaCUCGGGg -3' miRNA: 3'- gauaACAGCUUGCGG-----------UGCCG----------GAGUUC- -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 32707 | 0.7 | 0.754635 |
Target: 5'- -gAUUGUCGG--GCCGCGGCUcgcccuUCAGGu -3' miRNA: 3'- gaUAACAGCUugCGGUGCCGG------AGUUC- -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 4660 | 0.7 | 0.765055 |
Target: 5'- cCUAUcgGUUGAACagccauGCCGCGGCCggaUCGGGc -3' miRNA: 3'- -GAUAa-CAGCUUG------CGGUGCCGG---AGUUC- -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 53719 | 0.69 | 0.78546 |
Target: 5'- ----cGUCGAAgGCCGUGGCgCUCGAa -3' miRNA: 3'- gauaaCAGCUUgCGGUGCCG-GAGUUc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 31846 | 0.69 | 0.795421 |
Target: 5'- ---cUGUCGggUGCaCGCGGCaUCAAc -3' miRNA: 3'- gauaACAGCuuGCG-GUGCCGgAGUUc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 42004 | 0.69 | 0.804235 |
Target: 5'- ----cGaCGAACGCCcgccucgaaucggGCGGCCUCAc- -3' miRNA: 3'- gauaaCaGCUUGCGG-------------UGCCGGAGUuc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 44725 | 0.69 | 0.814803 |
Target: 5'- ----aGUUcaagGAGCGCgGCGGCgUCAAGg -3' miRNA: 3'- gauaaCAG----CUUGCGgUGCCGgAGUUC- -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 1286 | 0.69 | 0.814803 |
Target: 5'- ----cGUCGAACGCagCACGGCUaUCAGc -3' miRNA: 3'- gauaaCAGCUUGCG--GUGCCGG-AGUUc -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 58570 | 0.68 | 0.824202 |
Target: 5'- ----cGUCG-ACGCCACGGCgaucgugCAGGa -3' miRNA: 3'- gauaaCAGCuUGCGGUGCCGga-----GUUC- -5' |
|||||||
23859 | 3' | -51.4 | NC_005262.1 | + | 47433 | 0.68 | 0.851106 |
Target: 5'- -gGUUGcCGAACGCgGCGGCgccgaUCAGc -3' miRNA: 3'- gaUAACaGCUUGCGgUGCCGg----AGUUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home