miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 3' -51.4 NC_005262.1 + 503 0.66 0.930147
Target:  5'- ----cGUCG-ACGCCGagccagcagcCGGCCgUCAAGc -3'
miRNA:   3'- gauaaCAGCuUGCGGU----------GCCGG-AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 1286 0.69 0.814803
Target:  5'- ----cGUCGAACGCagCACGGCUaUCAGc -3'
miRNA:   3'- gauaaCAGCUUGCG--GUGCCGG-AGUUc -5'
23859 3' -51.4 NC_005262.1 + 1440 0.66 0.905246
Target:  5'- ----cGUCGAGCGCaGCGuuucgaauaGCCUCAAa -3'
miRNA:   3'- gauaaCAGCUUGCGgUGC---------CGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 2175 0.71 0.711784
Target:  5'- gCUAUUGUCGGACgGCUGCgucucguaGGCUUCGAu -3'
miRNA:   3'- -GAUAACAGCUUG-CGGUG--------CCGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 4660 0.7 0.765055
Target:  5'- cCUAUcgGUUGAACagccauGCCGCGGCCggaUCGGGc -3'
miRNA:   3'- -GAUAa-CAGCUUG------CGGUGCCGG---AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 5243 0.68 0.851106
Target:  5'- ----cGUCG-ACGCCGCGcugauugaauGCCUCGAa -3'
miRNA:   3'- gauaaCAGCuUGCGGUGC----------CGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 7071 0.74 0.523717
Target:  5'- ---aUGUCGAACGCCGacGCCUCGGa -3'
miRNA:   3'- gauaACAGCUUGCGGUgcCGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 7704 0.66 0.916385
Target:  5'- ---aUGUCGAuCGCCgagaaACGGCCguccgcgaucacguUCAGGa -3'
miRNA:   3'- gauaACAGCUuGCGG-----UGCCGG--------------AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 9365 0.66 0.905246
Target:  5'- ----gGUCGGcgcGCGCgGCGGCCUg--- -3'
miRNA:   3'- gauaaCAGCU---UGCGgUGCCGGAguuc -5'
23859 3' -51.4 NC_005262.1 + 9968 0.68 0.851106
Target:  5'- -gAUUGcCGAACGUCGCGGagccgaUCGAGc -3'
miRNA:   3'- gaUAACaGCUUGCGGUGCCgg----AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 10066 0.79 0.285618
Target:  5'- -gGUUGaagucgcguUCGAGCGCCACGGCCUuCGAc -3'
miRNA:   3'- gaUAAC---------AGCUUGCGGUGCCGGA-GUUc -5'
23859 3' -51.4 NC_005262.1 + 10176 0.67 0.898314
Target:  5'- ---aUGUCG-ACGCC-CGG-CUCGGGa -3'
miRNA:   3'- gauaACAGCuUGCGGuGCCgGAGUUC- -5'
23859 3' -51.4 NC_005262.1 + 11165 0.68 0.859612
Target:  5'- uCUGcgGUCGcGCGCCACGaGCCg---- -3'
miRNA:   3'- -GAUaaCAGCuUGCGGUGC-CGGaguuc -5'
23859 3' -51.4 NC_005262.1 + 12668 0.66 0.911897
Target:  5'- ----cGUCGAGCGCCuugucgacCGGCgCgUCGAGc -3'
miRNA:   3'- gauaaCAGCUUGCGGu-------GCCG-G-AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 15300 0.66 0.918266
Target:  5'- ----cGUCGAuuCGCCgcgcaugggcggGCGGCCgUCGAGc -3'
miRNA:   3'- gauaaCAGCUu-GCGG------------UGCCGG-AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 21124 0.71 0.711784
Target:  5'- ----cGUgCGGGCGCCACGGCUcgCAGa -3'
miRNA:   3'- gauaaCA-GCUUGCGGUGCCGGa-GUUc -5'
23859 3' -51.4 NC_005262.1 + 27885 0.67 0.883626
Target:  5'- ----aGUCGAGCGCCAucgacacugugcCGGCCcCGu- -3'
miRNA:   3'- gauaaCAGCUUGCGGU------------GCCGGaGUuc -5'
23859 3' -51.4 NC_005262.1 + 29114 0.66 0.911897
Target:  5'- gCUGcgUGUcCGAACGCCagucgggauaGCGGUCgUCGAGc -3'
miRNA:   3'- -GAUa-ACA-GCUUGCGG----------UGCCGG-AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 29445 0.66 0.905246
Target:  5'- uUGUUGUCG---GUCACGGCgUCGAu -3'
miRNA:   3'- gAUAACAGCuugCGGUGCCGgAGUUc -5'
23859 3' -51.4 NC_005262.1 + 30999 0.7 0.726969
Target:  5'- ----cGUCGAACGCgAUGGCCggcgcgccgccggugUCGAGc -3'
miRNA:   3'- gauaaCAGCUUGCGgUGCCGG---------------AGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.