miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 3' -51.4 NC_005262.1 + 62765 1.1 0.002585
Target:  5'- cCUAUUGUCGAACGCCACGGCCUCAAGa -3'
miRNA:   3'- -GAUAACAGCUUGCGGUGCCGGAGUUC- -5'
23859 3' -51.4 NC_005262.1 + 60447 0.66 0.930147
Target:  5'- uCUAg---CGA--GCCGCGGCCUCGu- -3'
miRNA:   3'- -GAUaacaGCUugCGGUGCCGGAGUuc -5'
23859 3' -51.4 NC_005262.1 + 58963 0.7 0.733419
Target:  5'- ----aGUCGAAccagccggcCGCCgGCGGCCUCAc- -3'
miRNA:   3'- gauaaCAGCUU---------GCGG-UGCCGGAGUuc -5'
23859 3' -51.4 NC_005262.1 + 58570 0.68 0.824202
Target:  5'- ----cGUCG-ACGCCACGGCgaucgugCAGGa -3'
miRNA:   3'- gauaaCAGCuUGCGGUGCCGga-----GUUC- -5'
23859 3' -51.4 NC_005262.1 + 53719 0.69 0.78546
Target:  5'- ----cGUCGAAgGCCGUGGCgCUCGAa -3'
miRNA:   3'- gauaaCAGCUUgCGGUGCCG-GAGUUc -5'
23859 3' -51.4 NC_005262.1 + 53078 0.66 0.930147
Target:  5'- --uUUGcggGAGCGCCggccgcgugcgcGCGGCCUCGAu -3'
miRNA:   3'- gauAACag-CUUGCGG------------UGCCGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 52787 0.66 0.918266
Target:  5'- ------cCGAcCGCUACGGCCgcuUCAAGg -3'
miRNA:   3'- gauaacaGCUuGCGGUGCCGG---AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 52575 0.67 0.875879
Target:  5'- ---cUGUCGAGCucGgCGCGGCuCUCGAu -3'
miRNA:   3'- gauaACAGCUUG--CgGUGCCG-GAGUUc -5'
23859 3' -51.4 NC_005262.1 + 51905 0.66 0.911897
Target:  5'- --uUUGUCG--UGCCGCGGCCa---- -3'
miRNA:   3'- gauAACAGCuuGCGGUGCCGGaguuc -5'
23859 3' -51.4 NC_005262.1 + 50238 0.66 0.930147
Target:  5'- ----aG-CGGAUGCCaagcaacggucGCGGCCUCGAu -3'
miRNA:   3'- gauaaCaGCUUGCGG-----------UGCCGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 49636 0.66 0.911897
Target:  5'- -----cUCGGugGCCucgcgaucgGCGGCCUgCAAGg -3'
miRNA:   3'- gauaacAGCUugCGG---------UGCCGGA-GUUC- -5'
23859 3' -51.4 NC_005262.1 + 49212 0.66 0.932386
Target:  5'- gUGUUGUugggugcggugcgcgUGAGCGCCGCGGCg----- -3'
miRNA:   3'- gAUAACA---------------GCUUGCGGUGCCGgaguuc -5'
23859 3' -51.4 NC_005262.1 + 47433 0.68 0.851106
Target:  5'- -gGUUGcCGAACGCgGCGGCgccgaUCAGc -3'
miRNA:   3'- gaUAACaGCUUGCGgUGCCGg----AGUUc -5'
23859 3' -51.4 NC_005262.1 + 45697 0.7 0.744086
Target:  5'- -aAUUGUCG-ACGCCGgCcGCUUCGAGg -3'
miRNA:   3'- gaUAACAGCuUGCGGU-GcCGGAGUUC- -5'
23859 3' -51.4 NC_005262.1 + 44725 0.69 0.814803
Target:  5'- ----aGUUcaagGAGCGCgGCGGCgUCAAGg -3'
miRNA:   3'- gauaaCAG----CUUGCGgUGCCGgAGUUC- -5'
23859 3' -51.4 NC_005262.1 + 42004 0.69 0.804235
Target:  5'- ----cGaCGAACGCCcgccucgaaucggGCGGCCUCAc- -3'
miRNA:   3'- gauaaCaGCUUGCGG-------------UGCCGGAGUuc -5'
23859 3' -51.4 NC_005262.1 + 41095 0.67 0.883626
Target:  5'- ----cGUC-AACGCCGcCGGCCacgUCGAGa -3'
miRNA:   3'- gauaaCAGcUUGCGGU-GCCGG---AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 39886 0.71 0.700839
Target:  5'- --cUUGcCGAACGCCuCGGCgUCGAu -3'
miRNA:   3'- gauAACaGCUUGCGGuGCCGgAGUUc -5'
23859 3' -51.4 NC_005262.1 + 35621 0.66 0.916385
Target:  5'- -aGUUGUCGAcggcCGCCGCGcgcaguugcgccgcGCgCUCGGGg -3'
miRNA:   3'- gaUAACAGCUu---GCGGUGC--------------CG-GAGUUC- -5'
23859 3' -51.4 NC_005262.1 + 35072 0.67 0.891106
Target:  5'- ----cGUcCGGGCG-CGCGGCCUCGc- -3'
miRNA:   3'- gauaaCA-GCUUGCgGUGCCGGAGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.