miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 2621 0.69 0.235571
Target:  5'- cAGCUCcucgAUACCcuugaccagaucgGCCCaUGCCUGCGCGGc -3'
miRNA:   3'- -UCGAGa---UGUGG-------------CGGG-GCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 47725 0.69 0.23211
Target:  5'- cGGCUCgccgccuguaucuggUGCGCCGCCggCCGCggcgaacccggcaUCGCGCGGg -3'
miRNA:   3'- -UCGAG---------------AUGUGGCGG--GGCG-------------GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 5242 0.69 0.230395
Target:  5'- cAGCuUCU-CGCCGCCUugguggaaCGCCuCGUGCAGc -3'
miRNA:   3'- -UCG-AGAuGUGGCGGG--------GCGG-GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 53214 0.69 0.230395
Target:  5'- cGCUC-GCGCCGCgCUGCUC-CGCGGu -3'
miRNA:   3'- uCGAGaUGUGGCGgGGCGGGcGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 35839 0.69 0.219236
Target:  5'- cGGCgUCgGCGCCGCgaCCGCCCagauguuuguGCGCGGc -3'
miRNA:   3'- -UCG-AGaUGUGGCGg-GGCGGG----------CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 52937 0.69 0.213831
Target:  5'- cGGC-CUGCGCCGCCUgggcuuCGCCgGCgGCAa -3'
miRNA:   3'- -UCGaGAUGUGGCGGG------GCGGgCG-CGUc -5'
23859 5' -63.2 NC_005262.1 + 11439 0.69 0.213831
Target:  5'- uGCgcgACA-CGCCgCGCCCGCGCAu -3'
miRNA:   3'- uCGagaUGUgGCGGgGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 19629 0.69 0.208542
Target:  5'- gAGCUCgcCGCCGCgcuCCUGCCCgaucGCGCGc -3'
miRNA:   3'- -UCGAGauGUGGCG---GGGCGGG----CGCGUc -5'
23859 5' -63.2 NC_005262.1 + 19948 0.69 0.208542
Target:  5'- aGGUcCUGC-CgGCCaCCGCCgCGCGCGGc -3'
miRNA:   3'- -UCGaGAUGuGgCGG-GGCGG-GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 58602 0.7 0.203365
Target:  5'- -cCUCggucGCGCCGgCCgCGCCCGCGCc- -3'
miRNA:   3'- ucGAGa---UGUGGCgGG-GCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 15308 0.7 0.203365
Target:  5'- cGGCUgcCgucGCGCCGCCCgUGCCCaCGCGGc -3'
miRNA:   3'- -UCGA--Ga--UGUGGCGGG-GCGGGcGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 58505 0.7 0.198301
Target:  5'- cGGCgaacCUGaaccagucgACCGCCCUGCCCGUGCu- -3'
miRNA:   3'- -UCGa---GAUg--------UGGCGGGGCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 11398 0.7 0.193346
Target:  5'- cGGCUCcACGCCGaagCCGCgCCGCGcCGGg -3'
miRNA:   3'- -UCGAGaUGUGGCgg-GGCG-GGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 49800 0.7 0.188501
Target:  5'- cGCccCUGCACCGUCCgGCCCgaucggccGCGCGa -3'
miRNA:   3'- uCGa-GAUGUGGCGGGgCGGG--------CGCGUc -5'
23859 5' -63.2 NC_005262.1 + 14226 0.71 0.174601
Target:  5'- cGGCcuUCUGCACgGCCUCGuUCUGCGCGa -3'
miRNA:   3'- -UCG--AGAUGUGgCGGGGC-GGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 48483 0.71 0.174601
Target:  5'- uGCUCgACgGCCG-CCCGCCCauGCGCGGc -3'
miRNA:   3'- uCGAGaUG-UGGCgGGGCGGG--CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 42669 0.71 0.170174
Target:  5'- uGGCUCUGCgaGCCGUggcgCCCGCaCGCGUGGc -3'
miRNA:   3'- -UCGAGAUG--UGGCG----GGGCGgGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 63776 0.71 0.161621
Target:  5'- gAGCaUgcCAUCGaCgCCGCCCGCGCAGg -3'
miRNA:   3'- -UCGaGauGUGGC-GgGGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 46233 0.71 0.161204
Target:  5'- cGGCUUcgcGCGCCGCCgcggcugCCGCCuCGCGCGc -3'
miRNA:   3'- -UCGAGa--UGUGGCGG-------GGCGG-GCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 20283 0.72 0.145669
Target:  5'- gAGCUUgcuaacgguUGCgACCGCCuugCCGUCCGCGUAGa -3'
miRNA:   3'- -UCGAG---------AUG-UGGCGG---GGCGGGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.