miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 50151 0.67 0.300504
Target:  5'- gAGC-CUgaGCugCGCgaCCGCCUGCGCu- -3'
miRNA:   3'- -UCGaGA--UGugGCGg-GGCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 51237 0.67 0.300504
Target:  5'- cAGCUCgacgaGCGCCGCCgCGaCCUGcCGCc- -3'
miRNA:   3'- -UCGAGa----UGUGGCGGgGC-GGGC-GCGuc -5'
23859 5' -63.2 NC_005262.1 + 27669 0.67 0.300504
Target:  5'- uGGCggUGC-UCGCCUCGCCguauCGCGCAGc -3'
miRNA:   3'- -UCGagAUGuGGCGGGGCGG----GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 13095 0.67 0.299798
Target:  5'- aAGgUCUGCGCCuucucgcgcgaGCCgaaccacUUGCCCGCGUAGg -3'
miRNA:   3'- -UCgAGAUGUGG-----------CGG-------GGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 16065 0.67 0.296287
Target:  5'- cGGCggcGCACCagauacaggcggcgaGCCgCCGCCCgGCGCGGu -3'
miRNA:   3'- -UCGagaUGUGG---------------CGG-GGCGGG-CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 55505 0.67 0.293501
Target:  5'- -cUUCUugGCCGCCUCGCgagCGaCGCGGg -3'
miRNA:   3'- ucGAGAugUGGCGGGGCGg--GC-GCGUC- -5'
23859 5' -63.2 NC_005262.1 + 54419 0.67 0.293501
Target:  5'- aAGCUCgcggagGCGCagGCCgCCGCgCGCGCc- -3'
miRNA:   3'- -UCGAGa-----UGUGg-CGG-GGCGgGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 40372 0.67 0.286626
Target:  5'- cGGCUCgaugACGCgGCUcaugCUGCCCGcCGCAu -3'
miRNA:   3'- -UCGAGa---UGUGgCGG----GGCGGGC-GCGUc -5'
23859 5' -63.2 NC_005262.1 + 49552 0.67 0.286626
Target:  5'- cGGCgacGCugCGUCCUGCUCGUGCGu -3'
miRNA:   3'- -UCGagaUGugGCGGGGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 59067 0.68 0.279878
Target:  5'- gAGCUCgaGCACCGCcugcucaccaaCCCGCacuUGCGCAa -3'
miRNA:   3'- -UCGAGa-UGUGGCG-----------GGGCGg--GCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 26904 0.68 0.273257
Target:  5'- gAGCUUgaGCGuCCGCUUCGUCUGCGCGc -3'
miRNA:   3'- -UCGAGa-UGU-GGCGGGGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 58495 0.68 0.273257
Target:  5'- cAGCUCcg-ACCGCCUCGaCCGCGUg- -3'
miRNA:   3'- -UCGAGaugUGGCGGGGCgGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 29750 0.68 0.273257
Target:  5'- cGCUCccgGCuaacCCGCCucaaCCGCCCgGCGUAGu -3'
miRNA:   3'- uCGAGa--UGu---GGCGG----GGCGGG-CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 23548 0.68 0.273257
Target:  5'- cGCgcagaCUGaccaACCG-CCCGCCgCGCGCGGg -3'
miRNA:   3'- uCGa----GAUg---UGGCgGGGCGG-GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 6824 0.68 0.266763
Target:  5'- aGGCggUCUugccgaccACGcCCGCgaaCUCGCCCGCGCGGa -3'
miRNA:   3'- -UCG--AGA--------UGU-GGCG---GGGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 25259 0.68 0.266763
Target:  5'- cGGCUcCUGCGCCGCCUCugGCaCCGCa--- -3'
miRNA:   3'- -UCGA-GAUGUGGCGGGG--CG-GGCGcguc -5'
23859 5' -63.2 NC_005262.1 + 51664 0.68 0.254149
Target:  5'- uGGCUCUccaGCGCgGCgaUCUGCUCGCGCGc -3'
miRNA:   3'- -UCGAGA---UGUGgCG--GGGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 58663 0.68 0.242029
Target:  5'- gAGUUCUACGaucaaGCCCgaGCCCGCGUu- -3'
miRNA:   3'- -UCGAGAUGUgg---CGGGg-CGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 1129 0.68 0.241436
Target:  5'- uGCUCUGCgGCCGCUgcgggcuucgaugCUG-CCGCGCGGg -3'
miRNA:   3'- uCGAGAUG-UGGCGG-------------GGCgGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 61766 0.69 0.235571
Target:  5'- gAGCUCguagcacGCGCCGaCCgaccagcgcguuuUCGCCUGCGCGGc -3'
miRNA:   3'- -UCGAGa------UGUGGC-GG-------------GGCGGGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.