miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 23548 0.68 0.273257
Target:  5'- cGCgcagaCUGaccaACCG-CCCGCCgCGCGCGGg -3'
miRNA:   3'- uCGa----GAUg---UGGCgGGGCGG-GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 25259 0.68 0.266763
Target:  5'- cGGCUcCUGCGCCGCCUCugGCaCCGCa--- -3'
miRNA:   3'- -UCGA-GAUGUGGCGGGG--CG-GGCGcguc -5'
23859 5' -63.2 NC_005262.1 + 26904 0.68 0.273257
Target:  5'- gAGCUUgaGCGuCCGCUUCGUCUGCGCGc -3'
miRNA:   3'- -UCGAGa-UGU-GGCGGGGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 27669 0.67 0.300504
Target:  5'- uGGCggUGC-UCGCCUCGCCguauCGCGCAGc -3'
miRNA:   3'- -UCGagAUGuGGCGGGGCGG----GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 29655 0.81 0.027676
Target:  5'- gAGCggcAUGCCGCCCgCGCCCGCGCAGc -3'
miRNA:   3'- -UCGagaUGUGGCGGG-GCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 29750 0.68 0.273257
Target:  5'- cGCUCccgGCuaacCCGCCucaaCCGCCCgGCGUAGu -3'
miRNA:   3'- uCGAGa--UGu---GGCGG----GGCGGG-CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 29881 0.66 0.352329
Target:  5'- gAGCUCgaGCACCGCCgcuaccgaucgggCCGCCgGCcgacGCAc -3'
miRNA:   3'- -UCGAGa-UGUGGCGG-------------GGCGGgCG----CGUc -5'
23859 5' -63.2 NC_005262.1 + 31493 0.67 0.322285
Target:  5'- cAGCgcacGCGCUGCCUcgacguucgCGCCCGCGCc- -3'
miRNA:   3'- -UCGaga-UGUGGCGGG---------GCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 35536 0.66 0.360346
Target:  5'- gGGCUUcgGCcaaGCCGCgaugucgCUCGCCgGCGCGGg -3'
miRNA:   3'- -UCGAGa-UG---UGGCG-------GGGCGGgCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 35758 0.67 0.322285
Target:  5'- aGGaugUUGCGCCaGCUCucggCGCCCGCGUAGa -3'
miRNA:   3'- -UCga-GAUGUGG-CGGG----GCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 35839 0.69 0.219236
Target:  5'- cGGCgUCgGCGCCGCgaCCGCCCagauguuuguGCGCGGc -3'
miRNA:   3'- -UCG-AGaUGUGGCGg-GGCGGG----------CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 40372 0.67 0.286626
Target:  5'- cGGCUCgaugACGCgGCUcaugCUGCCCGcCGCAu -3'
miRNA:   3'- -UCGAGa---UGUGgCGG----GGCGGGC-GCGUc -5'
23859 5' -63.2 NC_005262.1 + 40448 0.66 0.361154
Target:  5'- gGGCUau-CACCGacauCCCGgCCGUGCAu -3'
miRNA:   3'- -UCGAgauGUGGCg---GGGCgGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 42271 0.67 0.314896
Target:  5'- cGCgagCUGCACCGCuUCCGUguacUCGCGCu- -3'
miRNA:   3'- uCGa--GAUGUGGCG-GGGCG----GGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 42453 0.67 0.310524
Target:  5'- cGGC-CUugGCCGCCUcgaucgccuccuggaCGUgCGCGUAGg -3'
miRNA:   3'- -UCGaGAugUGGCGGG---------------GCGgGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 42669 0.71 0.170174
Target:  5'- uGGCUCUGCgaGCCGUggcgCCCGCaCGCGUGGc -3'
miRNA:   3'- -UCGAGAUG--UGGCG----GGGCGgGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 43187 0.66 0.337449
Target:  5'- uGGCggauuggCUACGCaacaGCCCUGCggcgcgCCGCGCGc -3'
miRNA:   3'- -UCGa------GAUGUGg---CGGGGCG------GGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 46233 0.71 0.161204
Target:  5'- cGGCUUcgcGCGCCGCCgcggcugCCGCCuCGCGCGc -3'
miRNA:   3'- -UCGAGa--UGUGGCGG-------GGCGG-GCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 46437 0.72 0.141912
Target:  5'- gGGCc---CGCCGCgCCGCCCGCGcCGGa -3'
miRNA:   3'- -UCGagauGUGGCGgGGCGGGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 46502 0.72 0.138244
Target:  5'- gAGCaCUccgaccGCGaCGCCCCuGCCCGCGCAGc -3'
miRNA:   3'- -UCGaGA------UGUgGCGGGG-CGGGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.