miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 1129 0.68 0.241436
Target:  5'- uGCUCUGCgGCCGCUgcgggcuucgaugCUG-CCGCGCGGg -3'
miRNA:   3'- uCGAGAUG-UGGCGG-------------GGCgGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 2382 0.67 0.314896
Target:  5'- -cCUCggcCGCCGCCuUCGCCuCGCGCGc -3'
miRNA:   3'- ucGAGau-GUGGCGG-GGCGG-GCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 2621 0.69 0.235571
Target:  5'- cAGCUCcucgAUACCcuugaccagaucgGCCCaUGCCUGCGCGGc -3'
miRNA:   3'- -UCGAGa---UGUGG-------------CGGG-GCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 3077 0.66 0.337449
Target:  5'- aGGUUCUGCGCCGUcaUCgGUuuGcCGCAGu -3'
miRNA:   3'- -UCGAGAUGUGGCG--GGgCGggC-GCGUC- -5'
23859 5' -63.2 NC_005262.1 + 3287 0.73 0.121176
Target:  5'- cGCUCUugGCgG-CCUGCgCCGCGCGGc -3'
miRNA:   3'- uCGAGAugUGgCgGGGCG-GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 5242 0.69 0.230395
Target:  5'- cAGCuUCU-CGCCGCCUugguggaaCGCCuCGUGCAGc -3'
miRNA:   3'- -UCG-AGAuGUGGCGGG--------GCGG-GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 6824 0.68 0.266763
Target:  5'- aGGCggUCUugccgaccACGcCCGCgaaCUCGCCCGCGCGGa -3'
miRNA:   3'- -UCG--AGA--------UGU-GGCG---GGGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 8442 0.66 0.337449
Target:  5'- cGCUCUuguCCGUCUCGUCgaGCGCGGc -3'
miRNA:   3'- uCGAGAuguGGCGGGGCGGg-CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 11398 0.7 0.193346
Target:  5'- cGGCUCcACGCCGaagCCGCgCCGCGcCGGg -3'
miRNA:   3'- -UCGAGaUGUGGCgg-GGCG-GGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 11439 0.69 0.213831
Target:  5'- uGCgcgACA-CGCCgCGCCCGCGCAu -3'
miRNA:   3'- uCGagaUGUgGCGGgGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 13095 0.67 0.299798
Target:  5'- aAGgUCUGCGCCuucucgcgcgaGCCgaaccacUUGCCCGCGUAGg -3'
miRNA:   3'- -UCgAGAUGUGG-----------CGG-------GGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 14226 0.71 0.174601
Target:  5'- cGGCcuUCUGCACgGCCUCGuUCUGCGCGa -3'
miRNA:   3'- -UCG--AGAUGUGgCGGGGC-GGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 15308 0.7 0.203365
Target:  5'- cGGCUgcCgucGCGCCGCCCgUGCCCaCGCGGc -3'
miRNA:   3'- -UCGA--Ga--UGUGGCGGG-GCGGGcGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 16065 0.67 0.296287
Target:  5'- cGGCggcGCACCagauacaggcggcgaGCCgCCGCCCgGCGCGGu -3'
miRNA:   3'- -UCGagaUGUGG---------------CGG-GGCGGG-CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 19629 0.69 0.208542
Target:  5'- gAGCUCgcCGCCGCgcuCCUGCCCgaucGCGCGc -3'
miRNA:   3'- -UCGAGauGUGGCG---GGGCGGG----CGCGUc -5'
23859 5' -63.2 NC_005262.1 + 19808 0.66 0.361154
Target:  5'- aAGCgac-CAUCGCCCgCGCgaucaCGCGCAGa -3'
miRNA:   3'- -UCGagauGUGGCGGG-GCGg----GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 19948 0.69 0.208542
Target:  5'- aGGUcCUGC-CgGCCaCCGCCgCGCGCGGc -3'
miRNA:   3'- -UCGaGAUGuGgCGG-GGCGG-GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 20172 0.66 0.361154
Target:  5'- cAGUUCUGCGCCgGUgCCGgcgagcgucaCCUGCGCGa -3'
miRNA:   3'- -UCGAGAUGUGG-CGgGGC----------GGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 20283 0.72 0.145669
Target:  5'- gAGCUUgcuaacgguUGCgACCGCCuugCCGUCCGCGUAGa -3'
miRNA:   3'- -UCGAG---------AUG-UGGCGG---GGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 22226 0.72 0.131167
Target:  5'- aAGCUCacggccGCGCCGCCCacgccggccgGCCUGCGCAu -3'
miRNA:   3'- -UCGAGa-----UGUGGCGGGg---------CGGGCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.