miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 62801 1.08 0.00023
Target:  5'- aAGCUCUACACCGCCCCGCCCGCGCAGg -3'
miRNA:   3'- -UCGAGAUGUGGCGGGGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 29655 0.81 0.027676
Target:  5'- gAGCggcAUGCCGCCCgCGCCCGCGCAGc -3'
miRNA:   3'- -UCGagaUGUGGCGGG-GCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 61122 0.8 0.034673
Target:  5'- gAGCUUgcuacggcggccaggACGCCGCCCgGCgCCGCGCAGg -3'
miRNA:   3'- -UCGAGa--------------UGUGGCGGGgCG-GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 51359 0.78 0.053813
Target:  5'- cAGCUCgGCACCGCgCCGUCCGCGaCGc -3'
miRNA:   3'- -UCGAGaUGUGGCGgGGCGGGCGC-GUc -5'
23859 5' -63.2 NC_005262.1 + 63592 0.76 0.067003
Target:  5'- uGGCUC--CGCCGcCCCCGCCgGCGUGGa -3'
miRNA:   3'- -UCGAGauGUGGC-GGGGCGGgCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 50080 0.75 0.076775
Target:  5'- aGGCcgCUGCGCCGaccgaaCCCGCgCCGCGCGa -3'
miRNA:   3'- -UCGa-GAUGUGGCg-----GGGCG-GGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 55693 0.75 0.081055
Target:  5'- gAGCUCUACACCGCgcaacgcuucuUCCaGCCCGaGCAGc -3'
miRNA:   3'- -UCGAGAUGUGGCG-----------GGG-CGGGCgCGUC- -5'
23859 5' -63.2 NC_005262.1 + 3287 0.73 0.121176
Target:  5'- cGCUCUugGCgG-CCUGCgCCGCGCGGc -3'
miRNA:   3'- uCGAGAugUGgCgGGGCG-GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 52308 0.72 0.131167
Target:  5'- gAGCUCggcgACGCgGCCCauguGCUCGCGCGc -3'
miRNA:   3'- -UCGAGa---UGUGgCGGGg---CGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 22226 0.72 0.131167
Target:  5'- aAGCUCacggccGCGCCGCCCacgccggccgGCCUGCGCAu -3'
miRNA:   3'- -UCGAGa-----UGUGGCGGGg---------CGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 46502 0.72 0.138244
Target:  5'- gAGCaCUccgaccGCGaCGCCCCuGCCCGCGCAGc -3'
miRNA:   3'- -UCGaGA------UGUgGCGGGG-CGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 46437 0.72 0.141912
Target:  5'- gGGCc---CGCCGCgCCGCCCGCGcCGGa -3'
miRNA:   3'- -UCGagauGUGGCGgGGCGGGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 20283 0.72 0.145669
Target:  5'- gAGCUUgcuaacgguUGCgACCGCCuugCCGUCCGCGUAGa -3'
miRNA:   3'- -UCGAG---------AUG-UGGCGG---GGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 46233 0.71 0.161204
Target:  5'- cGGCUUcgcGCGCCGCCgcggcugCCGCCuCGCGCGc -3'
miRNA:   3'- -UCGAGa--UGUGGCGG-------GGCGG-GCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 63776 0.71 0.161621
Target:  5'- gAGCaUgcCAUCGaCgCCGCCCGCGCAGg -3'
miRNA:   3'- -UCGaGauGUGGC-GgGGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 42669 0.71 0.170174
Target:  5'- uGGCUCUGCgaGCCGUggcgCCCGCaCGCGUGGc -3'
miRNA:   3'- -UCGAGAUG--UGGCG----GGGCGgGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 14226 0.71 0.174601
Target:  5'- cGGCcuUCUGCACgGCCUCGuUCUGCGCGa -3'
miRNA:   3'- -UCG--AGAUGUGgCGGGGC-GGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 48483 0.71 0.174601
Target:  5'- uGCUCgACgGCCG-CCCGCCCauGCGCGGc -3'
miRNA:   3'- uCGAGaUG-UGGCgGGGCGGG--CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 49800 0.7 0.188501
Target:  5'- cGCccCUGCACCGUCCgGCCCgaucggccGCGCGa -3'
miRNA:   3'- uCGa-GAUGUGGCGGGgCGGG--------CGCGUc -5'
23859 5' -63.2 NC_005262.1 + 11398 0.7 0.193346
Target:  5'- cGGCUCcACGCCGaagCCGCgCCGCGcCGGg -3'
miRNA:   3'- -UCGAGaUGUGGCgg-GGCG-GGCGC-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.