miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 58505 0.7 0.198301
Target:  5'- cGGCgaacCUGaaccagucgACCGCCCUGCCCGUGCu- -3'
miRNA:   3'- -UCGa---GAUg--------UGGCGGGGCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 58602 0.7 0.203365
Target:  5'- -cCUCggucGCGCCGgCCgCGCCCGCGCc- -3'
miRNA:   3'- ucGAGa---UGUGGCgGG-GCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 15308 0.7 0.203365
Target:  5'- cGGCUgcCgucGCGCCGCCCgUGCCCaCGCGGc -3'
miRNA:   3'- -UCGA--Ga--UGUGGCGGG-GCGGGcGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 19629 0.69 0.208542
Target:  5'- gAGCUCgcCGCCGCgcuCCUGCCCgaucGCGCGc -3'
miRNA:   3'- -UCGAGauGUGGCG---GGGCGGG----CGCGUc -5'
23859 5' -63.2 NC_005262.1 + 19948 0.69 0.208542
Target:  5'- aGGUcCUGC-CgGCCaCCGCCgCGCGCGGc -3'
miRNA:   3'- -UCGaGAUGuGgCGG-GGCGG-GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 11439 0.69 0.213831
Target:  5'- uGCgcgACA-CGCCgCGCCCGCGCAu -3'
miRNA:   3'- uCGagaUGUgGCGGgGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 52937 0.69 0.213831
Target:  5'- cGGC-CUGCGCCGCCUgggcuuCGCCgGCgGCAa -3'
miRNA:   3'- -UCGaGAUGUGGCGGG------GCGGgCG-CGUc -5'
23859 5' -63.2 NC_005262.1 + 35839 0.69 0.219236
Target:  5'- cGGCgUCgGCGCCGCgaCCGCCCagauguuuguGCGCGGc -3'
miRNA:   3'- -UCG-AGaUGUGGCGg-GGCGGG----------CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 53214 0.69 0.230395
Target:  5'- cGCUC-GCGCCGCgCUGCUC-CGCGGu -3'
miRNA:   3'- uCGAGaUGUGGCGgGGCGGGcGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 5242 0.69 0.230395
Target:  5'- cAGCuUCU-CGCCGCCUugguggaaCGCCuCGUGCAGc -3'
miRNA:   3'- -UCG-AGAuGUGGCGGG--------GCGG-GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 47725 0.69 0.23211
Target:  5'- cGGCUCgccgccuguaucuggUGCGCCGCCggCCGCggcgaacccggcaUCGCGCGGg -3'
miRNA:   3'- -UCGAG---------------AUGUGGCGG--GGCG-------------GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 2621 0.69 0.235571
Target:  5'- cAGCUCcucgAUACCcuugaccagaucgGCCCaUGCCUGCGCGGc -3'
miRNA:   3'- -UCGAGa---UGUGG-------------CGGG-GCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 61766 0.69 0.235571
Target:  5'- gAGCUCguagcacGCGCCGaCCgaccagcgcguuuUCGCCUGCGCGGc -3'
miRNA:   3'- -UCGAGa------UGUGGC-GG-------------GGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 1129 0.68 0.241436
Target:  5'- uGCUCUGCgGCCGCUgcgggcuucgaugCUG-CCGCGCGGg -3'
miRNA:   3'- uCGAGAUG-UGGCGG-------------GGCgGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 58663 0.68 0.242029
Target:  5'- gAGUUCUACGaucaaGCCCgaGCCCGCGUu- -3'
miRNA:   3'- -UCGAGAUGUgg---CGGGg-CGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 51664 0.68 0.254149
Target:  5'- uGGCUCUccaGCGCgGCgaUCUGCUCGCGCGc -3'
miRNA:   3'- -UCGAGA---UGUGgCG--GGGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 25259 0.68 0.266763
Target:  5'- cGGCUcCUGCGCCGCCUCugGCaCCGCa--- -3'
miRNA:   3'- -UCGA-GAUGUGGCGGGG--CG-GGCGcguc -5'
23859 5' -63.2 NC_005262.1 + 6824 0.68 0.266763
Target:  5'- aGGCggUCUugccgaccACGcCCGCgaaCUCGCCCGCGCGGa -3'
miRNA:   3'- -UCG--AGA--------UGU-GGCG---GGGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 26904 0.68 0.273257
Target:  5'- gAGCUUgaGCGuCCGCUUCGUCUGCGCGc -3'
miRNA:   3'- -UCGAGa-UGU-GGCGGGGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 58495 0.68 0.273257
Target:  5'- cAGCUCcg-ACCGCCUCGaCCGCGUg- -3'
miRNA:   3'- -UCGAGaugUGGCGGGGCgGGCGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.