Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23859 | 5' | -63.2 | NC_005262.1 | + | 40372 | 0.67 | 0.286626 |
Target: 5'- cGGCUCgaugACGCgGCUcaugCUGCCCGcCGCAu -3' miRNA: 3'- -UCGAGa---UGUGgCGG----GGCGGGC-GCGUc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 55505 | 0.67 | 0.293501 |
Target: 5'- -cUUCUugGCCGCCUCGCgagCGaCGCGGg -3' miRNA: 3'- ucGAGAugUGGCGGGGCGg--GC-GCGUC- -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 27669 | 0.67 | 0.300504 |
Target: 5'- uGGCggUGC-UCGCCUCGCCguauCGCGCAGc -3' miRNA: 3'- -UCGagAUGuGGCGGGGCGG----GCGCGUC- -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 16065 | 0.67 | 0.296287 |
Target: 5'- cGGCggcGCACCagauacaggcggcgaGCCgCCGCCCgGCGCGGu -3' miRNA: 3'- -UCGagaUGUGG---------------CGG-GGCGGG-CGCGUC- -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 51237 | 0.67 | 0.300504 |
Target: 5'- cAGCUCgacgaGCGCCGCCgCGaCCUGcCGCc- -3' miRNA: 3'- -UCGAGa----UGUGGCGGgGC-GGGC-GCGuc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 42453 | 0.67 | 0.310524 |
Target: 5'- cGGC-CUugGCCGCCUcgaucgccuccuggaCGUgCGCGUAGg -3' miRNA: 3'- -UCGaGAugUGGCGGG---------------GCGgGCGCGUC- -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 42271 | 0.67 | 0.314896 |
Target: 5'- cGCgagCUGCACCGCuUCCGUguacUCGCGCu- -3' miRNA: 3'- uCGa--GAUGUGGCG-GGGCG----GGCGCGuc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 2382 | 0.67 | 0.314896 |
Target: 5'- -cCUCggcCGCCGCCuUCGCCuCGCGCGc -3' miRNA: 3'- ucGAGau-GUGGCGG-GGCGG-GCGCGUc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 49552 | 0.67 | 0.286626 |
Target: 5'- cGGCgacGCugCGUCCUGCUCGUGCGu -3' miRNA: 3'- -UCGagaUGugGCGGGGCGGGCGCGUc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 59067 | 0.68 | 0.279878 |
Target: 5'- gAGCUCgaGCACCGCcugcucaccaaCCCGCacuUGCGCAa -3' miRNA: 3'- -UCGAGa-UGUGGCG-----------GGGCGg--GCGCGUc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 1129 | 0.68 | 0.241436 |
Target: 5'- uGCUCUGCgGCCGCUgcgggcuucgaugCUG-CCGCGCGGg -3' miRNA: 3'- uCGAGAUG-UGGCGG-------------GGCgGGCGCGUC- -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 23548 | 0.68 | 0.273257 |
Target: 5'- cGCgcagaCUGaccaACCG-CCCGCCgCGCGCGGg -3' miRNA: 3'- uCGa----GAUg---UGGCgGGGCGG-GCGCGUC- -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 29750 | 0.68 | 0.273257 |
Target: 5'- cGCUCccgGCuaacCCGCCucaaCCGCCCgGCGUAGu -3' miRNA: 3'- uCGAGa--UGu---GGCGG----GGCGGG-CGCGUC- -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 6824 | 0.68 | 0.266763 |
Target: 5'- aGGCggUCUugccgaccACGcCCGCgaaCUCGCCCGCGCGGa -3' miRNA: 3'- -UCG--AGA--------UGU-GGCG---GGGCGGGCGCGUC- -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 25259 | 0.68 | 0.266763 |
Target: 5'- cGGCUcCUGCGCCGCCUCugGCaCCGCa--- -3' miRNA: 3'- -UCGA-GAUGUGGCGGGG--CG-GGCGcguc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 58495 | 0.68 | 0.273257 |
Target: 5'- cAGCUCcg-ACCGCCUCGaCCGCGUg- -3' miRNA: 3'- -UCGAGaugUGGCGGGGCgGGCGCGuc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 26904 | 0.68 | 0.273257 |
Target: 5'- gAGCUUgaGCGuCCGCUUCGUCUGCGCGc -3' miRNA: 3'- -UCGAGa-UGU-GGCGGGGCGGGCGCGUc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 51664 | 0.68 | 0.254149 |
Target: 5'- uGGCUCUccaGCGCgGCgaUCUGCUCGCGCGc -3' miRNA: 3'- -UCGAGA---UGUGgCG--GGGCGGGCGCGUc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 58663 | 0.68 | 0.242029 |
Target: 5'- gAGUUCUACGaucaaGCCCgaGCCCGCGUu- -3' miRNA: 3'- -UCGAGAUGUgg---CGGGg-CGGGCGCGuc -5' |
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23859 | 5' | -63.2 | NC_005262.1 | + | 35839 | 0.69 | 0.219236 |
Target: 5'- cGGCgUCgGCGCCGCgaCCGCCCagauguuuguGCGCGGc -3' miRNA: 3'- -UCG-AGaUGUGGCGg-GGCGGG----------CGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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