miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 55693 0.75 0.081055
Target:  5'- gAGCUCUACACCGCgcaacgcuucuUCCaGCCCGaGCAGc -3'
miRNA:   3'- -UCGAGAUGUGGCG-----------GGG-CGGGCgCGUC- -5'
23859 5' -63.2 NC_005262.1 + 22226 0.72 0.131167
Target:  5'- aAGCUCacggccGCGCCGCCCacgccggccgGCCUGCGCAu -3'
miRNA:   3'- -UCGAGa-----UGUGGCGGGg---------CGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 46502 0.72 0.138244
Target:  5'- gAGCaCUccgaccGCGaCGCCCCuGCCCGCGCAGc -3'
miRNA:   3'- -UCGaGA------UGUgGCGGGG-CGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 46437 0.72 0.141912
Target:  5'- gGGCc---CGCCGCgCCGCCCGCGcCGGa -3'
miRNA:   3'- -UCGagauGUGGCGgGGCGGGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 52937 0.69 0.213831
Target:  5'- cGGC-CUGCGCCGCCUgggcuuCGCCgGCgGCAa -3'
miRNA:   3'- -UCGaGAUGUGGCGGG------GCGGgCG-CGUc -5'
23859 5' -63.2 NC_005262.1 + 11439 0.69 0.213831
Target:  5'- uGCgcgACA-CGCCgCGCCCGCGCAu -3'
miRNA:   3'- uCGagaUGUgGCGGgGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 58505 0.7 0.198301
Target:  5'- cGGCgaacCUGaaccagucgACCGCCCUGCCCGUGCu- -3'
miRNA:   3'- -UCGa---GAUg--------UGGCGGGGCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 11398 0.7 0.193346
Target:  5'- cGGCUCcACGCCGaagCCGCgCCGCGcCGGg -3'
miRNA:   3'- -UCGAGaUGUGGCgg-GGCG-GGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 49800 0.7 0.188501
Target:  5'- cGCccCUGCACCGUCCgGCCCgaucggccGCGCGa -3'
miRNA:   3'- uCGa-GAUGUGGCGGGgCGGG--------CGCGUc -5'
23859 5' -63.2 NC_005262.1 + 42669 0.71 0.170174
Target:  5'- uGGCUCUGCgaGCCGUggcgCCCGCaCGCGUGGc -3'
miRNA:   3'- -UCGAGAUG--UGGCG----GGGCGgGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 59215 0.66 0.329802
Target:  5'- cGCUC-ACGCCcgagcagcGCCgCCGCUgGCGCGa -3'
miRNA:   3'- uCGAGaUGUGG--------CGG-GGCGGgCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 51204 0.66 0.329802
Target:  5'- cGCUCauccGCGaCGCCUCGCCgGCgGCAGc -3'
miRNA:   3'- uCGAGa---UGUgGCGGGGCGGgCG-CGUC- -5'
23859 5' -63.2 NC_005262.1 + 43187 0.66 0.337449
Target:  5'- uGGCggauuggCUACGCaacaGCCCUGCggcgcgCCGCGCGc -3'
miRNA:   3'- -UCGa------GAUGUGg---CGGGGCG------GGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 50857 0.66 0.337449
Target:  5'- uGC-CgucGCGCaCGCCCuucagCGCgCCGCGCAGg -3'
miRNA:   3'- uCGaGa--UGUG-GCGGG-----GCG-GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 8442 0.66 0.337449
Target:  5'- cGCUCUuguCCGUCUCGUCgaGCGCGGc -3'
miRNA:   3'- uCGAGAuguGGCGGGGCGGg-CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 55571 0.66 0.345223
Target:  5'- gAGCUU--CGCCgacaGCUCaugGCCCGCGCGGa -3'
miRNA:   3'- -UCGAGauGUGG----CGGGg--CGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 50407 0.66 0.348368
Target:  5'- gAGCUCguggaUGCGCgCGCCCaggcgcaggauuccgUGCUgGCGCAGc -3'
miRNA:   3'- -UCGAG-----AUGUG-GCGGG---------------GCGGgCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 29881 0.66 0.352329
Target:  5'- gAGCUCgaGCACCGCCgcuaccgaucgggCCGCCgGCcgacGCAc -3'
miRNA:   3'- -UCGAGa-UGUGGCGG-------------GGCGGgCG----CGUc -5'
23859 5' -63.2 NC_005262.1 + 19808 0.66 0.361154
Target:  5'- aAGCgac-CAUCGCCCgCGCgaucaCGCGCAGa -3'
miRNA:   3'- -UCGagauGUGGCGGG-GCGg----GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 61122 0.8 0.034673
Target:  5'- gAGCUUgcuacggcggccaggACGCCGCCCgGCgCCGCGCAGg -3'
miRNA:   3'- -UCGAGa--------------UGUGGCGGGgCG-GGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.