miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 25259 0.68 0.266763
Target:  5'- cGGCUcCUGCGCCGCCUCugGCaCCGCa--- -3'
miRNA:   3'- -UCGA-GAUGUGGCGGGG--CG-GGCGcguc -5'
23859 5' -63.2 NC_005262.1 + 11439 0.69 0.213831
Target:  5'- uGCgcgACA-CGCCgCGCCCGCGCAu -3'
miRNA:   3'- uCGagaUGUgGCGGgGCGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 52937 0.69 0.213831
Target:  5'- cGGC-CUGCGCCGCCUgggcuuCGCCgGCgGCAa -3'
miRNA:   3'- -UCGaGAUGUGGCGGG------GCGGgCG-CGUc -5'
23859 5' -63.2 NC_005262.1 + 35839 0.69 0.219236
Target:  5'- cGGCgUCgGCGCCGCgaCCGCCCagauguuuguGCGCGGc -3'
miRNA:   3'- -UCG-AGaUGUGGCGg-GGCGGG----------CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 47725 0.69 0.23211
Target:  5'- cGGCUCgccgccuguaucuggUGCGCCGCCggCCGCggcgaacccggcaUCGCGCGGg -3'
miRNA:   3'- -UCGAG---------------AUGUGGCGG--GGCG-------------GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 2621 0.69 0.235571
Target:  5'- cAGCUCcucgAUACCcuugaccagaucgGCCCaUGCCUGCGCGGc -3'
miRNA:   3'- -UCGAGa---UGUGG-------------CGGG-GCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 61766 0.69 0.235571
Target:  5'- gAGCUCguagcacGCGCCGaCCgaccagcgcguuuUCGCCUGCGCGGc -3'
miRNA:   3'- -UCGAGa------UGUGGC-GG-------------GGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 1129 0.68 0.241436
Target:  5'- uGCUCUGCgGCCGCUgcgggcuucgaugCUG-CCGCGCGGg -3'
miRNA:   3'- uCGAGAUG-UGGCGG-------------GGCgGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 58663 0.68 0.242029
Target:  5'- gAGUUCUACGaucaaGCCCgaGCCCGCGUu- -3'
miRNA:   3'- -UCGAGAUGUgg---CGGGg-CGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 58505 0.7 0.198301
Target:  5'- cGGCgaacCUGaaccagucgACCGCCCUGCCCGUGCu- -3'
miRNA:   3'- -UCGa---GAUg--------UGGCGGGGCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 11398 0.7 0.193346
Target:  5'- cGGCUCcACGCCGaagCCGCgCCGCGcCGGg -3'
miRNA:   3'- -UCGAGaUGUGGCgg-GGCG-GGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 49800 0.7 0.188501
Target:  5'- cGCccCUGCACCGUCCgGCCCgaucggccGCGCGa -3'
miRNA:   3'- uCGa-GAUGUGGCGGGgCGGG--------CGCGUc -5'
23859 5' -63.2 NC_005262.1 + 51359 0.78 0.053813
Target:  5'- cAGCUCgGCACCGCgCCGUCCGCGaCGc -3'
miRNA:   3'- -UCGAGaUGUGGCGgGGCGGGCGC-GUc -5'
23859 5' -63.2 NC_005262.1 + 63592 0.76 0.067003
Target:  5'- uGGCUC--CGCCGcCCCCGCCgGCGUGGa -3'
miRNA:   3'- -UCGAGauGUGGC-GGGGCGGgCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 50080 0.75 0.076775
Target:  5'- aGGCcgCUGCGCCGaccgaaCCCGCgCCGCGCGa -3'
miRNA:   3'- -UCGa-GAUGUGGCg-----GGGCG-GGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 55693 0.75 0.081055
Target:  5'- gAGCUCUACACCGCgcaacgcuucuUCCaGCCCGaGCAGc -3'
miRNA:   3'- -UCGAGAUGUGGCG-----------GGG-CGGGCgCGUC- -5'
23859 5' -63.2 NC_005262.1 + 22226 0.72 0.131167
Target:  5'- aAGCUCacggccGCGCCGCCCacgccggccgGCCUGCGCAu -3'
miRNA:   3'- -UCGAGa-----UGUGGCGGGg---------CGGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 46502 0.72 0.138244
Target:  5'- gAGCaCUccgaccGCGaCGCCCCuGCCCGCGCAGc -3'
miRNA:   3'- -UCGaGA------UGUgGCGGGG-CGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 46437 0.72 0.141912
Target:  5'- gGGCc---CGCCGCgCCGCCCGCGcCGGa -3'
miRNA:   3'- -UCGagauGUGGCGgGGCGGGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 42669 0.71 0.170174
Target:  5'- uGGCUCUGCgaGCCGUggcgCCCGCaCGCGUGGc -3'
miRNA:   3'- -UCGAGAUG--UGGCG----GGGCGgGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.