miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 63776 0.71 0.161621
Target:  5'- gAGCaUgcCAUCGaCgCCGCCCGCGCAGg -3'
miRNA:   3'- -UCGaGauGUGGC-GgGGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 63592 0.76 0.067003
Target:  5'- uGGCUC--CGCCGcCCCCGCCgGCGUGGa -3'
miRNA:   3'- -UCGAGauGUGGC-GGGGCGGgCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 62801 1.08 0.00023
Target:  5'- aAGCUCUACACCGCCCCGCCCGCGCAGg -3'
miRNA:   3'- -UCGAGAUGUGGCGGGGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 61766 0.69 0.235571
Target:  5'- gAGCUCguagcacGCGCCGaCCgaccagcgcguuuUCGCCUGCGCGGc -3'
miRNA:   3'- -UCGAGa------UGUGGC-GG-------------GGCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 61122 0.8 0.034673
Target:  5'- gAGCUUgcuacggcggccaggACGCCGCCCgGCgCCGCGCAGg -3'
miRNA:   3'- -UCGAGa--------------UGUGGCGGGgCG-GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 59244 0.66 0.36931
Target:  5'- gAGCUgCUGCA-CGCUCaGCaCGCGCAGg -3'
miRNA:   3'- -UCGA-GAUGUgGCGGGgCGgGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 59215 0.66 0.329802
Target:  5'- cGCUC-ACGCCcgagcagcGCCgCCGCUgGCGCGa -3'
miRNA:   3'- uCGAGaUGUGG--------CGG-GGCGGgCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 59067 0.68 0.279878
Target:  5'- gAGCUCgaGCACCGCcugcucaccaaCCCGCacuUGCGCAa -3'
miRNA:   3'- -UCGAGa-UGUGGCG-----------GGGCGg--GCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 58663 0.68 0.242029
Target:  5'- gAGUUCUACGaucaaGCCCgaGCCCGCGUu- -3'
miRNA:   3'- -UCGAGAUGUgg---CGGGg-CGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 58602 0.7 0.203365
Target:  5'- -cCUCggucGCGCCGgCCgCGCCCGCGCc- -3'
miRNA:   3'- ucGAGa---UGUGGCgGG-GCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 58505 0.7 0.198301
Target:  5'- cGGCgaacCUGaaccagucgACCGCCCUGCCCGUGCu- -3'
miRNA:   3'- -UCGa---GAUg--------UGGCGGGGCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 58495 0.68 0.273257
Target:  5'- cAGCUCcg-ACCGCCUCGaCCGCGUg- -3'
miRNA:   3'- -UCGAGaugUGGCGGGGCgGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 57436 0.66 0.353125
Target:  5'- cGCUCcgGCACCGUCCgCGgaugCCGCGgCGGc -3'
miRNA:   3'- uCGAGa-UGUGGCGGG-GCg---GGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 55693 0.75 0.081055
Target:  5'- gAGCUCUACACCGCgcaacgcuucuUCCaGCCCGaGCAGc -3'
miRNA:   3'- -UCGAGAUGUGGCG-----------GGG-CGGGCgCGUC- -5'
23859 5' -63.2 NC_005262.1 + 55571 0.66 0.345223
Target:  5'- gAGCUU--CGCCgacaGCUCaugGCCCGCGCGGa -3'
miRNA:   3'- -UCGAGauGUGG----CGGGg--CGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 55505 0.67 0.293501
Target:  5'- -cUUCUugGCCGCCUCGCgagCGaCGCGGg -3'
miRNA:   3'- ucGAGAugUGGCGGGGCGg--GC-GCGUC- -5'
23859 5' -63.2 NC_005262.1 + 54419 0.67 0.293501
Target:  5'- aAGCUCgcggagGCGCagGCCgCCGCgCGCGCc- -3'
miRNA:   3'- -UCGAGa-----UGUGg-CGG-GGCGgGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 53214 0.69 0.230395
Target:  5'- cGCUC-GCGCCGCgCUGCUC-CGCGGu -3'
miRNA:   3'- uCGAGaUGUGGCGgGGCGGGcGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 52937 0.69 0.213831
Target:  5'- cGGC-CUGCGCCGCCUgggcuuCGCCgGCgGCAa -3'
miRNA:   3'- -UCGaGAUGUGGCGGG------GCGGgCG-CGUc -5'
23859 5' -63.2 NC_005262.1 + 52308 0.72 0.131167
Target:  5'- gAGCUCggcgACGCgGCCCauguGCUCGCGCGc -3'
miRNA:   3'- -UCGAGa---UGUGgCGGGg---CGGGCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.