miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 3' -54 NC_005262.1 + 10552 0.67 0.73571
Target:  5'- --gACGCGAc-CGg-CCGCgCGCAGCCg -3'
miRNA:   3'- aagUGCGUUauGCaaGGCG-GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 40591 0.67 0.733588
Target:  5'- gUCGCGCug-ACGguggcgcagaUGCCGCAGCa -3'
miRNA:   3'- aAGUGCGuuaUGCaag-------GCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 28549 0.67 0.725061
Target:  5'- gUUCACGCcuaucugggGC-UUCCGCCGCGcGCg -3'
miRNA:   3'- -AAGUGCGuua------UGcAAGGCGGCGU-CGg -5'
23861 3' -54 NC_005262.1 + 1405 0.67 0.725061
Target:  5'- cUUGCGCug-AUGaUCCGCCacgaccGCGGCCg -3'
miRNA:   3'- aAGUGCGuuaUGCaAGGCGG------CGUCGG- -5'
23861 3' -54 NC_005262.1 + 11885 0.67 0.725061
Target:  5'- aUCGCGCGAaAgGUg--GCCGCGGCa -3'
miRNA:   3'- aAGUGCGUUaUgCAaggCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 51191 0.67 0.725061
Target:  5'- --gACGCG--GCGgcCCGCUGgAGCCg -3'
miRNA:   3'- aagUGCGUuaUGCaaGGCGGCgUCGG- -5'
23861 3' -54 NC_005262.1 + 39035 0.67 0.714319
Target:  5'- cUCGcCGCGGUGCugaauccacUUCgGCCGCAcGCCg -3'
miRNA:   3'- aAGU-GCGUUAUGc--------AAGgCGGCGU-CGG- -5'
23861 3' -54 NC_005262.1 + 60426 0.67 0.71324
Target:  5'- --gGCGCAuagcaucGUGCGgcaUCUagcgaGCCGCGGCCu -3'
miRNA:   3'- aagUGCGU-------UAUGCa--AGG-----CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 20591 0.68 0.703495
Target:  5'- --aGCGCGcgGCGcgCCGCagggcuguugCGUAGCCa -3'
miRNA:   3'- aagUGCGUuaUGCaaGGCG----------GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 13705 0.68 0.703495
Target:  5'- gUUCGCGCGGcGCGgguucggUCgGCgcaGCGGCCu -3'
miRNA:   3'- -AAGUGCGUUaUGCa------AGgCGg--CGUCGG- -5'
23861 3' -54 NC_005262.1 + 46692 0.68 0.703495
Target:  5'- -cCGCGCGGUggaccuccucGCGgcCCGCCGCGucgacgggcgcGCCu -3'
miRNA:   3'- aaGUGCGUUA----------UGCaaGGCGGCGU-----------CGG- -5'
23861 3' -54 NC_005262.1 + 44273 0.68 0.6926
Target:  5'- -aCGCGCGAUu--UUCUGaCCGCAGCg -3'
miRNA:   3'- aaGUGCGUUAugcAAGGC-GGCGUCGg -5'
23861 3' -54 NC_005262.1 + 26413 0.68 0.6926
Target:  5'- -aCGCGCGAcGCGUUCCcGCUGCucuGGUUc -3'
miRNA:   3'- aaGUGCGUUaUGCAAGG-CGGCG---UCGG- -5'
23861 3' -54 NC_005262.1 + 29163 0.68 0.6926
Target:  5'- -gCGCGCGAccaUGCGUcaggCgGCCGUcGCCg -3'
miRNA:   3'- aaGUGCGUU---AUGCAa---GgCGGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 13472 0.68 0.6926
Target:  5'- gUCcUGCGcgGCGgg-CGCUGCGGCCg -3'
miRNA:   3'- aAGuGCGUuaUGCaagGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 47988 0.68 0.6926
Target:  5'- --aGCGCGAgaugGC-UUuuGCCGguGCCg -3'
miRNA:   3'- aagUGCGUUa---UGcAAggCGGCguCGG- -5'
23861 3' -54 NC_005262.1 + 54780 0.68 0.691507
Target:  5'- gUUACGgGuucGUGCG-UCCGCCcuaucauGCGGCCg -3'
miRNA:   3'- aAGUGCgU---UAUGCaAGGCGG-------CGUCGG- -5'
23861 3' -54 NC_005262.1 + 6066 0.68 0.681646
Target:  5'- -cCACGgGGuUGCG-UCagGCCGCGGCCu -3'
miRNA:   3'- aaGUGCgUU-AUGCaAGg-CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 21630 0.68 0.681646
Target:  5'- aUCACGUAcagACGaUCgGCCGCgaccgGGCCc -3'
miRNA:   3'- aAGUGCGUua-UGCaAGgCGGCG-----UCGG- -5'
23861 3' -54 NC_005262.1 + 20463 0.68 0.681646
Target:  5'- -cCGCGUGGgcUGUUCCGCagaGCGGCg -3'
miRNA:   3'- aaGUGCGUUauGCAAGGCGg--CGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.