miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 3' -54 NC_005262.1 + 54422 0.66 0.777129
Target:  5'- cUCGCGgAG-GCGcaggCCGCCGCGcgcGCCg -3'
miRNA:   3'- aAGUGCgUUaUGCaa--GGCGGCGU---CGG- -5'
23861 3' -54 NC_005262.1 + 22363 0.66 0.777129
Target:  5'- -cCGCGUggUGCGgagggugUCCGgCGCGGaUCg -3'
miRNA:   3'- aaGUGCGuuAUGCa------AGGCgGCGUC-GG- -5'
23861 3' -54 NC_005262.1 + 3734 0.66 0.777129
Target:  5'- --uGCGCcugGAUGgGUUCCGC-GCGGCUc -3'
miRNA:   3'- aagUGCG---UUAUgCAAGGCGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 4955 0.67 0.766973
Target:  5'- gUCGC-CGAUcuGCGUgccgaagcgCCGCaGCAGCCa -3'
miRNA:   3'- aAGUGcGUUA--UGCAa--------GGCGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 23290 0.67 0.766973
Target:  5'- gUCGCGCAggucgaugGUGcCGUUCUGCcCGUccGCCa -3'
miRNA:   3'- aAGUGCGU--------UAU-GCAAGGCG-GCGu-CGG- -5'
23861 3' -54 NC_005262.1 + 58709 0.67 0.766973
Target:  5'- -gCGCGCAccgccgagccgGUcgcACGcgCCGCCGCcgcgGGCCu -3'
miRNA:   3'- aaGUGCGU-----------UA---UGCaaGGCGGCG----UCGG- -5'
23861 3' -54 NC_005262.1 + 52815 0.67 0.766973
Target:  5'- --aGCGCGAccgGCGUUcCCGgCGC-GCCg -3'
miRNA:   3'- aagUGCGUUa--UGCAA-GGCgGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 41069 0.67 0.760812
Target:  5'- -gCugGCGAUugGUgucccggcacgcucgUCaaCGCCGCcGGCCa -3'
miRNA:   3'- aaGugCGUUAugCA---------------AG--GCGGCG-UCGG- -5'
23861 3' -54 NC_005262.1 + 59099 0.67 0.756677
Target:  5'- cUUGCGCAAcgACuggaUGCCGCGGCCc -3'
miRNA:   3'- aAGUGCGUUa-UGcaagGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 37243 0.67 0.756677
Target:  5'- cUgGCGCAGcGCG-UCgGCCGCuucggaguGGCCg -3'
miRNA:   3'- aAgUGCGUUaUGCaAGgCGGCG--------UCGG- -5'
23861 3' -54 NC_005262.1 + 6506 0.67 0.756677
Target:  5'- --gGCGCu---CGUUCUGCUGCacgcgGGCCg -3'
miRNA:   3'- aagUGCGuuauGCAAGGCGGCG-----UCGG- -5'
23861 3' -54 NC_005262.1 + 45911 0.67 0.756677
Target:  5'- aUCGgGCGgugcucgauGUGCGUUCCGUggucgaccuCGUAGCUg -3'
miRNA:   3'- aAGUgCGU---------UAUGCAAGGCG---------GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 2663 0.67 0.756677
Target:  5'- --gGCGCcgggcgGCGUccuggCCGCCGUAGCa -3'
miRNA:   3'- aagUGCGuua---UGCAa----GGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 37585 0.67 0.746252
Target:  5'- cUUCACGaaguagcuGUACGgcUCGCCcCAGCCu -3'
miRNA:   3'- -AAGUGCgu------UAUGCaaGGCGGcGUCGG- -5'
23861 3' -54 NC_005262.1 + 31499 0.67 0.746252
Target:  5'- -aCGCGCugccucgACGUUCgCGCcCGC-GCCg -3'
miRNA:   3'- aaGUGCGuua----UGCAAG-GCG-GCGuCGG- -5'
23861 3' -54 NC_005262.1 + 14559 0.67 0.746252
Target:  5'- aUCG-GCAG-GCGUcUCGCCGCGGCg -3'
miRNA:   3'- aAGUgCGUUaUGCAaGGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 38545 0.67 0.746252
Target:  5'- gUCGCGguGacgauCGgcaCCGCCGCgGGCCg -3'
miRNA:   3'- aAGUGCguUau---GCaa-GGCGGCG-UCGG- -5'
23861 3' -54 NC_005262.1 + 40096 0.67 0.73571
Target:  5'- --aAUGCAGUugGCGUUCuCGCUGCuGCg -3'
miRNA:   3'- aagUGCGUUA--UGCAAG-GCGGCGuCGg -5'
23861 3' -54 NC_005262.1 + 49151 0.67 0.73571
Target:  5'- -gCACGguGgGCGUgcaggccgcaUCgGCCGCAGCg -3'
miRNA:   3'- aaGUGCguUaUGCA----------AGgCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 59592 0.67 0.73571
Target:  5'- -gCGCGCGAcUACGaUCagGCCGUGGUCg -3'
miRNA:   3'- aaGUGCGUU-AUGCaAGg-CGGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.