Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23861 | 3' | -54 | NC_005262.1 | + | 60975 | 0.72 | 0.475688 |
Target: 5'- cUCGCuCGAUGCGUUCCugucgGCCGU-GCCg -3' miRNA: 3'- aAGUGcGUUAUGCAAGG-----CGGCGuCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 18790 | 0.71 | 0.485943 |
Target: 5'- -cCGCGUGuugGCG-UCCGCCGCcuGCCg -3' miRNA: 3'- aaGUGCGUua-UGCaAGGCGGCGu-CGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 12279 | 0.71 | 0.485943 |
Target: 5'- gUUGCGCAcgGuCGUcucgCCGuuGCGGCCg -3' miRNA: 3'- aAGUGCGUuaU-GCAa---GGCggCGUCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 19863 | 0.71 | 0.49526 |
Target: 5'- gUCGCGCA--GCGUguuguagUCgGCCGCGGUUg -3' miRNA: 3'- aAGUGCGUuaUGCA-------AGgCGGCGUCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 28697 | 0.71 | 0.496301 |
Target: 5'- --gGCGCGGUcgACGauaucgacgagUUCCGCCGCgaGGCCg -3' miRNA: 3'- aagUGCGUUA--UGC-----------AAGGCGGCG--UCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 16656 | 0.71 | 0.506758 |
Target: 5'- -gCACGCGGacgACaaGUUCaagugGCCGCAGCCg -3' miRNA: 3'- aaGUGCGUUa--UG--CAAGg----CGGCGUCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 61359 | 0.7 | 0.53866 |
Target: 5'- cUUCugGCGccagaacgACGUgaagCCGCugCGCAGCCg -3' miRNA: 3'- -AAGugCGUua------UGCAa---GGCG--GCGUCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 46016 | 0.7 | 0.54945 |
Target: 5'- -aCGCGCAAgGCGUcgcgCUGCCGC-GCUa -3' miRNA: 3'- aaGUGCGUUaUGCAa---GGCGGCGuCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 21507 | 0.7 | 0.560306 |
Target: 5'- -aCGCGCGAgaacACGU--CGCCGguGCCc -3' miRNA: 3'- aaGUGCGUUa---UGCAagGCGGCguCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 38882 | 0.7 | 0.560306 |
Target: 5'- aUCGCGUGGaacUGCGauucaCCGCCGCAGUa -3' miRNA: 3'- aAGUGCGUU---AUGCaa---GGCGGCGUCGg -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 6079 | 0.7 | 0.560306 |
Target: 5'- cUCAUGCGGcGCGcgUCGUgGCGGCCu -3' miRNA: 3'- aAGUGCGUUaUGCaaGGCGgCGUCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 10830 | 0.7 | 0.57122 |
Target: 5'- --aGCGC-AUGCGcgUCCGCCGC-GCUc -3' miRNA: 3'- aagUGCGuUAUGCa-AGGCGGCGuCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 15904 | 0.7 | 0.57122 |
Target: 5'- --uGCGCGcgACGUggCGCCGCGaugcGCCg -3' miRNA: 3'- aagUGCGUuaUGCAagGCGGCGU----CGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 22133 | 0.7 | 0.57122 |
Target: 5'- ----gGCAAU-CGUcuggCCGCCGCGGCUg -3' miRNA: 3'- aagugCGUUAuGCAa---GGCGGCGUCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 52374 | 0.7 | 0.57122 |
Target: 5'- gUCGCGCAccuucgGCGgcCCGgCGCGGCg -3' miRNA: 3'- aAGUGCGUua----UGCaaGGCgGCGUCGg -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 57275 | 0.7 | 0.57122 |
Target: 5'- cUCGCGCAGcucACGgcCCGCgUGCAGCa -3' miRNA: 3'- aAGUGCGUUa--UGCaaGGCG-GCGUCGg -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 46231 | 0.7 | 0.582185 |
Target: 5'- cUCG-GCuucGCGcgCCGCCGCGGCUg -3' miRNA: 3'- aAGUgCGuuaUGCaaGGCGGCGUCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 11379 | 0.7 | 0.593192 |
Target: 5'- --aGCGCAcgACGUUCgCGC-GCGGCUc -3' miRNA: 3'- aagUGCGUuaUGCAAG-GCGgCGUCGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 21439 | 0.7 | 0.593192 |
Target: 5'- gUC-CGCGAgcuggucgaGUUCCGCCGCuuugcguGCCg -3' miRNA: 3'- aAGuGCGUUaug------CAAGGCGGCGu------CGG- -5' |
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23861 | 3' | -54 | NC_005262.1 | + | 31749 | 0.7 | 0.593192 |
Target: 5'- gUCGCGCAAgcgcACGguccacaacaUCCGCCGCAucGCg -3' miRNA: 3'- aAGUGCGUUa---UGCa---------AGGCGGCGU--CGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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