miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 3' -54 NC_005262.1 + 11885 0.67 0.725061
Target:  5'- aUCGCGCGAaAgGUg--GCCGCGGCa -3'
miRNA:   3'- aAGUGCGUUaUgCAaggCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 12279 0.71 0.485943
Target:  5'- gUUGCGCAcgGuCGUcucgCCGuuGCGGCCg -3'
miRNA:   3'- aAGUGCGUuaU-GCAa---GGCggCGUCGG- -5'
23861 3' -54 NC_005262.1 + 12398 0.66 0.787132
Target:  5'- -gCACGCGGUGCacacggUCaGgCGCGGCCu -3'
miRNA:   3'- aaGUGCGUUAUGca----AGgCgGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 12602 0.69 0.615297
Target:  5'- -cCGCGCGGcuccaGCGggCCGCCGCGucgucggcuGCCu -3'
miRNA:   3'- aaGUGCGUUa----UGCaaGGCGGCGU---------CGG- -5'
23861 3' -54 NC_005262.1 + 13037 0.76 0.255439
Target:  5'- -cUACGCGGUGCGcgUCgaGCUGCGGCCg -3'
miRNA:   3'- aaGUGCGUUAUGCa-AGg-CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 13418 0.66 0.813293
Target:  5'- gUUCGCGUcgccacggucgacgAAUGCG--CCGCuCGCGGUCg -3'
miRNA:   3'- -AAGUGCG--------------UUAUGCaaGGCG-GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 13472 0.68 0.6926
Target:  5'- gUCcUGCGcgGCGgg-CGCUGCGGCCg -3'
miRNA:   3'- aAGuGCGUuaUGCaagGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 13705 0.68 0.703495
Target:  5'- gUUCGCGCGGcGCGgguucggUCgGCgcaGCGGCCu -3'
miRNA:   3'- -AAGUGCGUUaUGCa------AGgCGg--CGUCGG- -5'
23861 3' -54 NC_005262.1 + 14559 0.67 0.746252
Target:  5'- aUCG-GCAG-GCGUcUCGCCGCGGCg -3'
miRNA:   3'- aAGUgCGUUaUGCAaGGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 14569 0.75 0.297713
Target:  5'- -gCGCGCGGacUGCGcgCCGCCGaGGCCg -3'
miRNA:   3'- aaGUGCGUU--AUGCaaGGCGGCgUCGG- -5'
23861 3' -54 NC_005262.1 + 14618 0.82 0.109437
Target:  5'- aUCAuCGCcGUGCGcgCCGCUGCGGCCg -3'
miRNA:   3'- aAGU-GCGuUAUGCaaGGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 15310 0.66 0.816117
Target:  5'- -cCGCGCAuggGCGggCgGCCGUcgAGCa -3'
miRNA:   3'- aaGUGCGUua-UGCaaGgCGGCG--UCGg -5'
23861 3' -54 NC_005262.1 + 15711 0.68 0.681646
Target:  5'- aUCGCGCGucggcgccggGCGgcUCGUCGCGGCa -3'
miRNA:   3'- aAGUGCGUua--------UGCaaGGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 15904 0.7 0.57122
Target:  5'- --uGCGCGcgACGUggCGCCGCGaugcGCCg -3'
miRNA:   3'- aagUGCGUuaUGCAagGCGGCGU----CGG- -5'
23861 3' -54 NC_005262.1 + 16039 0.84 0.07756
Target:  5'- -cCGCGCGAUGCcgggUUCGCCGCGGCCg -3'
miRNA:   3'- aaGUGCGUUAUGca--AGGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 16656 0.71 0.506758
Target:  5'- -gCACGCGGacgACaaGUUCaagugGCCGCAGCCg -3'
miRNA:   3'- aaGUGCGUUa--UG--CAAGg----CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 17145 0.66 0.787132
Target:  5'- --gGCGCcAUGCug-CCGCUGuCGGCCa -3'
miRNA:   3'- aagUGCGuUAUGcaaGGCGGC-GUCGG- -5'
23861 3' -54 NC_005262.1 + 17551 0.72 0.435804
Target:  5'- -gCGCGCGAgGCGgcagCCGCgGCGGCg -3'
miRNA:   3'- aaGUGCGUUaUGCaa--GGCGgCGUCGg -5'
23861 3' -54 NC_005262.1 + 18790 0.71 0.485943
Target:  5'- -cCGCGUGuugGCG-UCCGCCGCcuGCCg -3'
miRNA:   3'- aaGUGCGUua-UGCaAGGCGGCGu-CGG- -5'
23861 3' -54 NC_005262.1 + 19863 0.71 0.49526
Target:  5'- gUCGCGCA--GCGUguuguagUCgGCCGCGGUUg -3'
miRNA:   3'- aAGUGCGUuaUGCA-------AGgCGGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.