miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 3' -54 NC_005262.1 + 24740 0.66 0.784148
Target:  5'- -gCGCGCGAUcgGCGUgcggCCGaaguggauucagcaCCGCGGCg -3'
miRNA:   3'- aaGUGCGUUA--UGCAa---GGC--------------GGCGUCGg -5'
23861 3' -54 NC_005262.1 + 57699 0.66 0.806637
Target:  5'- gUUC-CGCAacGUGCGgaucaCCgagaagaagGCCGCGGCCu -3'
miRNA:   3'- -AAGuGCGU--UAUGCaa---GG---------CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 22898 0.66 0.80086
Target:  5'- --gGCGUAGUACGguggUCgguucucgugugcggUGCCGCuGCCg -3'
miRNA:   3'- aagUGCGUUAUGCa---AG---------------GCGGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 59592 0.67 0.73571
Target:  5'- -gCGCGCGAcUACGaUCagGCCGUGGUCg -3'
miRNA:   3'- aaGUGCGUU-AUGCaAGg-CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 40591 0.67 0.733588
Target:  5'- gUCGCGCug-ACGguggcgcagaUGCCGCAGCa -3'
miRNA:   3'- aAGUGCGuuaUGCaag-------GCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 49151 0.67 0.73571
Target:  5'- -gCACGguGgGCGUgcaggccgcaUCgGCCGCAGCg -3'
miRNA:   3'- aaGUGCguUaUGCA----------AGgCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 51191 0.67 0.725061
Target:  5'- --gACGCG--GCGgcCCGCUGgAGCCg -3'
miRNA:   3'- aagUGCGUuaUGCaaGGCGGCgUCGG- -5'
23861 3' -54 NC_005262.1 + 1405 0.67 0.725061
Target:  5'- cUUGCGCug-AUGaUCCGCCacgaccGCGGCCg -3'
miRNA:   3'- aAGUGCGuuaUGCaAGGCGG------CGUCGG- -5'
23861 3' -54 NC_005262.1 + 11885 0.67 0.725061
Target:  5'- aUCGCGCGAaAgGUg--GCCGCGGCa -3'
miRNA:   3'- aAGUGCGUUaUgCAaggCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 28549 0.67 0.725061
Target:  5'- gUUCACGCcuaucugggGC-UUCCGCCGCGcGCg -3'
miRNA:   3'- -AAGUGCGuua------UGcAAGGCGGCGU-CGg -5'
23861 3' -54 NC_005262.1 + 40096 0.67 0.73571
Target:  5'- --aAUGCAGUugGCGUUCuCGCUGCuGCg -3'
miRNA:   3'- aagUGCGUUA--UGCAAG-GCGGCGuCGg -5'
23861 3' -54 NC_005262.1 + 38545 0.67 0.746252
Target:  5'- gUCGCGguGacgauCGgcaCCGCCGCgGGCCg -3'
miRNA:   3'- aAGUGCguUau---GCaa-GGCGGCG-UCGG- -5'
23861 3' -54 NC_005262.1 + 10552 0.67 0.73571
Target:  5'- --gACGCGAc-CGg-CCGCgCGCAGCCg -3'
miRNA:   3'- aagUGCGUUauGCaaGGCG-GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 41069 0.67 0.760812
Target:  5'- -gCugGCGAUugGUgucccggcacgcucgUCaaCGCCGCcGGCCa -3'
miRNA:   3'- aaGugCGUUAugCA---------------AG--GCGGCG-UCGG- -5'
23861 3' -54 NC_005262.1 + 2663 0.67 0.756677
Target:  5'- --gGCGCcgggcgGCGUccuggCCGCCGUAGCa -3'
miRNA:   3'- aagUGCGuua---UGCAa----GGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 14559 0.67 0.746252
Target:  5'- aUCG-GCAG-GCGUcUCGCCGCGGCg -3'
miRNA:   3'- aAGUgCGUUaUGCAaGGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 52815 0.67 0.766973
Target:  5'- --aGCGCGAccgGCGUUcCCGgCGC-GCCg -3'
miRNA:   3'- aagUGCGUUa--UGCAA-GGCgGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 58709 0.67 0.766973
Target:  5'- -gCGCGCAccgccgagccgGUcgcACGcgCCGCCGCcgcgGGCCu -3'
miRNA:   3'- aaGUGCGU-----------UA---UGCaaGGCGGCG----UCGG- -5'
23861 3' -54 NC_005262.1 + 23290 0.67 0.766973
Target:  5'- gUCGCGCAggucgaugGUGcCGUUCUGCcCGUccGCCa -3'
miRNA:   3'- aAGUGCGU--------UAU-GCAAGGCG-GCGu-CGG- -5'
23861 3' -54 NC_005262.1 + 4955 0.67 0.766973
Target:  5'- gUCGC-CGAUcuGCGUgccgaagcgCCGCaGCAGCCa -3'
miRNA:   3'- aAGUGcGUUA--UGCAa--------GGCGgCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.