miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 3' -54 NC_005262.1 + 258 0.66 0.791089
Target:  5'- uUUCGCGCGG-ACGUacacgcgcugagugCCGCUGCugagacGGCCa -3'
miRNA:   3'- -AAGUGCGUUaUGCAa-------------GGCGGCG------UCGG- -5'
23861 3' -54 NC_005262.1 + 1405 0.67 0.725061
Target:  5'- cUUGCGCug-AUGaUCCGCCacgaccGCGGCCg -3'
miRNA:   3'- aAGUGCGuuaUGCaAGGCGG------CGUCGG- -5'
23861 3' -54 NC_005262.1 + 1690 0.68 0.670644
Target:  5'- aUC-CGCGAcGCGguugCCGCgGCGGCg -3'
miRNA:   3'- aAGuGCGUUaUGCaa--GGCGgCGUCGg -5'
23861 3' -54 NC_005262.1 + 2663 0.67 0.756677
Target:  5'- --gGCGCcgggcgGCGUccuggCCGCCGUAGCa -3'
miRNA:   3'- aagUGCGuua---UGCAa----GGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 3283 0.69 0.637461
Target:  5'- gUCACGCucuugGCGgccUgCGCCGCgcGGCCc -3'
miRNA:   3'- aAGUGCGuua--UGCa--AgGCGGCG--UCGG- -5'
23861 3' -54 NC_005262.1 + 3729 0.66 0.777129
Target:  5'- gUCGCGCGcgGCGUUgCGCaggaugaaCGCcggguuauAGCCg -3'
miRNA:   3'- aAGUGCGUuaUGCAAgGCG--------GCG--------UCGG- -5'
23861 3' -54 NC_005262.1 + 3734 0.66 0.777129
Target:  5'- --uGCGCcugGAUGgGUUCCGC-GCGGCUc -3'
miRNA:   3'- aagUGCG---UUAUgCAAGGCGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 3845 0.68 0.670644
Target:  5'- -cCGCGCGugACGUgCCGCUGaugguaGGCCg -3'
miRNA:   3'- aaGUGCGUuaUGCAaGGCGGCg-----UCGG- -5'
23861 3' -54 NC_005262.1 + 4760 0.69 0.637461
Target:  5'- cUUCACGCGGUucAUGUugUCCugcaCCGCGGCUu -3'
miRNA:   3'- -AAGUGCGUUA--UGCA--AGGc---GGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 4815 0.77 0.224081
Target:  5'- --gGCGCGGgagGCGUgaggCCGCCGgCGGCCg -3'
miRNA:   3'- aagUGCGUUa--UGCAa---GGCGGC-GUCGG- -5'
23861 3' -54 NC_005262.1 + 4955 0.67 0.766973
Target:  5'- gUCGC-CGAUcuGCGUgccgaagcgCCGCaGCAGCCa -3'
miRNA:   3'- aAGUGcGUUA--UGCAa--------GGCGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 6066 0.68 0.681646
Target:  5'- -cCACGgGGuUGCG-UCagGCCGCGGCCu -3'
miRNA:   3'- aaGUGCgUU-AUGCaAGg-CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 6079 0.7 0.560306
Target:  5'- cUCAUGCGGcGCGcgUCGUgGCGGCCu -3'
miRNA:   3'- aAGUGCGUUaUGCaaGGCGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 6506 0.67 0.756677
Target:  5'- --gGCGCu---CGUUCUGCUGCacgcgGGCCg -3'
miRNA:   3'- aagUGCGuuauGCAAGGCGGCG-----UCGG- -5'
23861 3' -54 NC_005262.1 + 6749 0.69 0.604232
Target:  5'- cUCGCGCGccuCGUUgUGCuCGUGGCCg -3'
miRNA:   3'- aAGUGCGUuauGCAAgGCG-GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 10552 0.67 0.73571
Target:  5'- --gACGCGAc-CGg-CCGCgCGCAGCCg -3'
miRNA:   3'- aagUGCGUUauGCaaGGCG-GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 10830 0.7 0.57122
Target:  5'- --aGCGC-AUGCGcgUCCGCCGC-GCUc -3'
miRNA:   3'- aagUGCGuUAUGCa-AGGCGGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 11031 0.68 0.670644
Target:  5'- gUCGCGCAAgaccGCGcgCagcaacagGCCGCAGCg -3'
miRNA:   3'- aAGUGCGUUa---UGCaaGg-------CGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 11379 0.7 0.593192
Target:  5'- --aGCGCAcgACGUUCgCGC-GCGGCUc -3'
miRNA:   3'- aagUGCGUuaUGCAAG-GCGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 11565 0.66 0.816117
Target:  5'- aUCACGCGcgcUGCuaugCCgGCgGCGGCCa -3'
miRNA:   3'- aAGUGCGUu--AUGcaa-GG-CGgCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.