miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 3' -54 NC_005262.1 + 53373 0.7 0.593192
Target:  5'- --gGCGCcAUGCGc-CUGCCGCAGaCCg -3'
miRNA:   3'- aagUGCGuUAUGCaaGGCGGCGUC-GG- -5'
23861 3' -54 NC_005262.1 + 61359 0.7 0.53866
Target:  5'- cUUCugGCGccagaacgACGUgaagCCGCugCGCAGCCg -3'
miRNA:   3'- -AAGugCGUua------UGCAa---GGCG--GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 46016 0.7 0.54945
Target:  5'- -aCGCGCAAgGCGUcgcgCUGCCGC-GCUa -3'
miRNA:   3'- aaGUGCGUUaUGCAa---GGCGGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 38882 0.7 0.560306
Target:  5'- aUCGCGUGGaacUGCGauucaCCGCCGCAGUa -3'
miRNA:   3'- aAGUGCGUU---AUGCaa---GGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 10830 0.7 0.57122
Target:  5'- --aGCGC-AUGCGcgUCCGCCGC-GCUc -3'
miRNA:   3'- aagUGCGuUAUGCa-AGGCGGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 15904 0.7 0.57122
Target:  5'- --uGCGCGcgACGUggCGCCGCGaugcGCCg -3'
miRNA:   3'- aagUGCGUuaUGCAagGCGGCGU----CGG- -5'
23861 3' -54 NC_005262.1 + 22133 0.7 0.57122
Target:  5'- ----gGCAAU-CGUcuggCCGCCGCGGCUg -3'
miRNA:   3'- aagugCGUUAuGCAa---GGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 57275 0.7 0.57122
Target:  5'- cUCGCGCAGcucACGgcCCGCgUGCAGCa -3'
miRNA:   3'- aAGUGCGUUa--UGCaaGGCG-GCGUCGg -5'
23861 3' -54 NC_005262.1 + 11379 0.7 0.593192
Target:  5'- --aGCGCAcgACGUUCgCGC-GCGGCUc -3'
miRNA:   3'- aagUGCGUuaUGCAAG-GCGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 16656 0.71 0.506758
Target:  5'- -gCACGCGGacgACaaGUUCaagugGCCGCAGCCg -3'
miRNA:   3'- aaGUGCGUUa--UG--CAAGg----CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 28697 0.71 0.496301
Target:  5'- --gGCGCGGUcgACGauaucgacgagUUCCGCCGCgaGGCCg -3'
miRNA:   3'- aagUGCGUUA--UGC-----------AAGGCGGCG--UCGG- -5'
23861 3' -54 NC_005262.1 + 60975 0.72 0.475688
Target:  5'- cUCGCuCGAUGCGUUCCugucgGCCGU-GCCg -3'
miRNA:   3'- aAGUGcGUUAUGCAAGG-----CGGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 55914 0.77 0.23008
Target:  5'- cUCGCGCAGUACGUcgaccgUCCggcgaucgaggGCgGCGGCCg -3'
miRNA:   3'- aAGUGCGUUAUGCA------AGG-----------CGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 13037 0.76 0.255439
Target:  5'- -cUACGCGGUGCGcgUCgaGCUGCGGCCg -3'
miRNA:   3'- aaGUGCGUUAUGCa-AGg-CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 55267 0.76 0.262127
Target:  5'- aUCACGCAcucgGCGUUCgGCCGCAucgGCa -3'
miRNA:   3'- aAGUGCGUua--UGCAAGgCGGCGU---CGg -5'
23861 3' -54 NC_005262.1 + 50557 0.74 0.336933
Target:  5'- cUCGCGCAcc-CGUUCaaCCGCAGCCc -3'
miRNA:   3'- aAGUGCGUuauGCAAGgcGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 17551 0.72 0.435804
Target:  5'- -gCGCGCGAgGCGgcagCCGCgGCGGCg -3'
miRNA:   3'- aaGUGCGUUaUGCaa--GGCGgCGUCGg -5'
23861 3' -54 NC_005262.1 + 60801 0.72 0.445596
Target:  5'- -aCACGCugcGCGUUCCGCUGUcGCa -3'
miRNA:   3'- aaGUGCGuuaUGCAAGGCGGCGuCGg -5'
23861 3' -54 NC_005262.1 + 58850 0.72 0.45551
Target:  5'- -gCACGCAGaucggcgACGUcacgCCGgCGCAGCCc -3'
miRNA:   3'- aaGUGCGUUa------UGCAa---GGCgGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 62079 0.72 0.474668
Target:  5'- --gGCGUAgcuucucgaccucAUGCGUcgCCGCCGCGGCa -3'
miRNA:   3'- aagUGCGU-------------UAUGCAa-GGCGGCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.