Results 1 - 20 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23861 | 3' | -54 | NC_005262.1 | + | 58190 | 0.66 | 0.816117 |
Target: 5'- gUCGCGaacauCGacgCCGCCGCGGUg -3' miRNA: 3'- aAGUGCguuauGCaa-GGCGGCGUCGg -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 23290 | 0.67 | 0.766973 |
Target: 5'- gUCGCGCAggucgaugGUGcCGUUCUGCcCGUccGCCa -3' miRNA: 3'- aAGUGCGU--------UAU-GCAAGGCG-GCGu-CGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 45911 | 0.67 | 0.756677 |
Target: 5'- aUCGgGCGgugcucgauGUGCGUUCCGUggucgaccuCGUAGCUg -3' miRNA: 3'- aAGUgCGU---------UAUGCAAGGCG---------GCGUCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 62277 | 1.09 | 0.00134 |
Target: 5'- gUUCACGCAAUACGUUCCGCCGCAGCCu -3' miRNA: 3'- -AAGUGCGUUAUGCAAGGCGGCGUCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 57699 | 0.66 | 0.806637 |
Target: 5'- gUUC-CGCAacGUGCGgaucaCCgagaagaagGCCGCGGCCu -3' miRNA: 3'- -AAGuGCGU--UAUGCaa---GG---------CGGCGUCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 22898 | 0.66 | 0.80086 |
Target: 5'- --gGCGUAGUACGguggUCgguucucgugugcggUGCCGCuGCCg -3' miRNA: 3'- aagUGCGUUAUGCa---AG---------------GCGGCGuCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 30765 | 0.66 | 0.796972 |
Target: 5'- gUCGgGCGGUACGUcagcaUCaGgCGCAGCUu -3' miRNA: 3'- aAGUgCGUUAUGCA-----AGgCgGCGUCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 25113 | 0.66 | 0.796972 |
Target: 5'- -gCACaGCAAgaauCGUUgCGUCaGCGGCCa -3' miRNA: 3'- aaGUG-CGUUau--GCAAgGCGG-CGUCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 30520 | 0.66 | 0.787132 |
Target: 5'- -gCGCGCGAUGCGguaCGCCucGCGGaUCg -3' miRNA: 3'- aaGUGCGUUAUGCaagGCGG--CGUC-GG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 58709 | 0.67 | 0.766973 |
Target: 5'- -gCGCGCAccgccgagccgGUcgcACGcgCCGCCGCcgcgGGCCu -3' miRNA: 3'- aaGUGCGU-----------UA---UGCaaGGCGGCG----UCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 12398 | 0.66 | 0.787132 |
Target: 5'- -gCACGCGGUGCacacggUCaGgCGCGGCCu -3' miRNA: 3'- aaGUGCGUUAUGca----AGgCgGCGUCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 258 | 0.66 | 0.791089 |
Target: 5'- uUUCGCGCGG-ACGUacacgcgcugagugCCGCUGCugagacGGCCa -3' miRNA: 3'- -AAGUGCGUUaUGCAa-------------GGCGGCG------UCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 13418 | 0.66 | 0.813293 |
Target: 5'- gUUCGCGUcgccacggucgacgAAUGCG--CCGCuCGCGGUCg -3' miRNA: 3'- -AAGUGCG--------------UUAUGCaaGGCG-GCGUCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 3729 | 0.66 | 0.777129 |
Target: 5'- gUCGCGCGcgGCGUUgCGCaggaugaaCGCcggguuauAGCCg -3' miRNA: 3'- aAGUGCGUuaUGCAAgGCG--------GCG--------UCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 40379 | 0.66 | 0.806637 |
Target: 5'- aUgACGCGgcucAUGCugcCCGCCGCAucGCCg -3' miRNA: 3'- aAgUGCGU----UAUGcaaGGCGGCGU--CGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 24977 | 0.66 | 0.796972 |
Target: 5'- -gCACGCGAgacggucaGCGUaUCCGuuGCucgcGCCg -3' miRNA: 3'- aaGUGCGUUa-------UGCA-AGGCggCGu---CGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 52815 | 0.67 | 0.766973 |
Target: 5'- --aGCGCGAccgGCGUUcCCGgCGC-GCCg -3' miRNA: 3'- aagUGCGUUa--UGCAA-GGCgGCGuCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 4955 | 0.67 | 0.766973 |
Target: 5'- gUCGC-CGAUcuGCGUgccgaagcgCCGCaGCAGCCa -3' miRNA: 3'- aAGUGcGUUA--UGCAa--------GGCGgCGUCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 32907 | 0.66 | 0.806637 |
Target: 5'- --aGCGCGAgcgGCGUcaccaUCCgGCCGCcggcgacuccucGGCCg -3' miRNA: 3'- aagUGCGUUa--UGCA-----AGG-CGGCG------------UCGG- -5' |
|||||||
23861 | 3' | -54 | NC_005262.1 | + | 49455 | 0.66 | 0.796972 |
Target: 5'- -gCGCGCAAgcACGUcgcaacUUCGCCGCccAGCUc -3' miRNA: 3'- aaGUGCGUUa-UGCA------AGGCGGCG--UCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home