miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 3' -54 NC_005262.1 + 62277 1.09 0.00134
Target:  5'- gUUCACGCAAUACGUUCCGCCGCAGCCu -3'
miRNA:   3'- -AAGUGCGUUAUGCAAGGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 16039 0.84 0.07756
Target:  5'- -cCGCGCGAUGCcgggUUCGCCGCGGCCg -3'
miRNA:   3'- aaGUGCGUUAUGca--AGGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 14618 0.82 0.109437
Target:  5'- aUCAuCGCcGUGCGcgCCGCUGCGGCCg -3'
miRNA:   3'- aAGU-GCGuUAUGCaaGGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 63553 0.77 0.218216
Target:  5'- -cCGCGCGAaAUGUcCCGCCGCcGCCg -3'
miRNA:   3'- aaGUGCGUUaUGCAaGGCGGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 4815 0.77 0.224081
Target:  5'- --gGCGCGGgagGCGUgaggCCGCCGgCGGCCg -3'
miRNA:   3'- aagUGCGUUa--UGCAa---GGCGGC-GUCGG- -5'
23861 3' -54 NC_005262.1 + 55914 0.77 0.23008
Target:  5'- cUCGCGCAGUACGUcgaccgUCCggcgaucgaggGCgGCGGCCg -3'
miRNA:   3'- aAGUGCGUUAUGCA------AGG-----------CGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 13037 0.76 0.255439
Target:  5'- -cUACGCGGUGCGcgUCgaGCUGCGGCCg -3'
miRNA:   3'- aaGUGCGUUAUGCa-AGg-CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 55267 0.76 0.262127
Target:  5'- aUCACGCAcucgGCGUUCgGCCGCAucgGCa -3'
miRNA:   3'- aAGUGCGUua--UGCAAGgCGGCGU---CGg -5'
23861 3' -54 NC_005262.1 + 41649 0.76 0.268957
Target:  5'- cUCG-GCGAUGCGggcagCCGCgGCGGCCa -3'
miRNA:   3'- aAGUgCGUUAUGCaa---GGCGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 34336 0.75 0.297713
Target:  5'- cUUCGCcucgGCGAccUGCGccUCUGCCGCAGCCu -3'
miRNA:   3'- -AAGUG----CGUU--AUGCa-AGGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 14569 0.75 0.297713
Target:  5'- -gCGCGCGGacUGCGcgCCGCCGaGGCCg -3'
miRNA:   3'- aaGUGCGUU--AUGCaaGGCGGCgUCGG- -5'
23861 3' -54 NC_005262.1 + 51925 0.75 0.305265
Target:  5'- uUUCGCGCGAUACacgUCGCCGaCAGCg -3'
miRNA:   3'- -AAGUGCGUUAUGcaaGGCGGC-GUCGg -5'
23861 3' -54 NC_005262.1 + 50557 0.74 0.336933
Target:  5'- cUCGCGCAcc-CGUUCaaCCGCAGCCc -3'
miRNA:   3'- aAGUGCGUuauGCAAGgcGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 53230 0.73 0.416598
Target:  5'- cUC-CGCGGUACGcugcggCUGCgCGCGGCCg -3'
miRNA:   3'- aAGuGCGUUAUGCaa----GGCG-GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 17551 0.72 0.435804
Target:  5'- -gCGCGCGAgGCGgcagCCGCgGCGGCg -3'
miRNA:   3'- aaGUGCGUUaUGCaa--GGCGgCGUCGg -5'
23861 3' -54 NC_005262.1 + 60801 0.72 0.445596
Target:  5'- -aCACGCugcGCGUUCCGCUGUcGCa -3'
miRNA:   3'- aaGUGCGuuaUGCAAGGCGGCGuCGg -5'
23861 3' -54 NC_005262.1 + 58850 0.72 0.45551
Target:  5'- -gCACGCAGaucggcgACGUcacgCCGgCGCAGCCc -3'
miRNA:   3'- aaGUGCGUUa------UGCAa---GGCgGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 30891 0.72 0.45551
Target:  5'- gUCGCGC-GUGCGacgCCGCCgGCuuGGCCg -3'
miRNA:   3'- aAGUGCGuUAUGCaa-GGCGG-CG--UCGG- -5'
23861 3' -54 NC_005262.1 + 31004 0.72 0.465543
Target:  5'- --aACGCGAUggccgGCGcgCCGCCGguGUCg -3'
miRNA:   3'- aagUGCGUUA-----UGCaaGGCGGCguCGG- -5'
23861 3' -54 NC_005262.1 + 62079 0.72 0.474668
Target:  5'- --gGCGUAgcuucucgaccucAUGCGUcgCCGCCGCGGCa -3'
miRNA:   3'- aagUGCGU-------------UAUGCAa-GGCGGCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.