miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 3' -54 NC_005262.1 + 63553 0.77 0.218216
Target:  5'- -cCGCGCGAaAUGUcCCGCCGCcGCCg -3'
miRNA:   3'- aaGUGCGUUaUGCAaGGCGGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 62739 0.69 0.615297
Target:  5'- -gCGCGCug-GCGgUCagCGCCGCAGCa -3'
miRNA:   3'- aaGUGCGuuaUGCaAG--GCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 62277 1.09 0.00134
Target:  5'- gUUCACGCAAUACGUUCCGCCGCAGCCu -3'
miRNA:   3'- -AAGUGCGUUAUGCAAGGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 62079 0.72 0.474668
Target:  5'- --gGCGUAgcuucucgaccucAUGCGUcgCCGCCGCGGCa -3'
miRNA:   3'- aagUGCGU-------------UAUGCAa-GGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 61359 0.7 0.53866
Target:  5'- cUUCugGCGccagaacgACGUgaagCCGCugCGCAGCCg -3'
miRNA:   3'- -AAGugCGUua------UGCAa---GGCG--GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 60975 0.72 0.475688
Target:  5'- cUCGCuCGAUGCGUUCCugucgGCCGU-GCCg -3'
miRNA:   3'- aAGUGcGUUAUGCAAGG-----CGGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 60801 0.72 0.445596
Target:  5'- -aCACGCugcGCGUUCCGCUGUcGCa -3'
miRNA:   3'- aaGUGCGuuaUGCAAGGCGGCGuCGg -5'
23861 3' -54 NC_005262.1 + 60426 0.67 0.71324
Target:  5'- --gGCGCAuagcaucGUGCGgcaUCUagcgaGCCGCGGCCu -3'
miRNA:   3'- aagUGCGU-------UAUGCa--AGG-----CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 59592 0.67 0.73571
Target:  5'- -gCGCGCGAcUACGaUCagGCCGUGGUCg -3'
miRNA:   3'- aaGUGCGUU-AUGCaAGg-CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 59099 0.67 0.756677
Target:  5'- cUUGCGCAAcgACuggaUGCCGCGGCCc -3'
miRNA:   3'- aAGUGCGUUa-UGcaagGCGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 58850 0.72 0.45551
Target:  5'- -gCACGCAGaucggcgACGUcacgCCGgCGCAGCCc -3'
miRNA:   3'- aaGUGCGUUa------UGCAa---GGCgGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 58709 0.67 0.766973
Target:  5'- -gCGCGCAccgccgagccgGUcgcACGcgCCGCCGCcgcgGGCCu -3'
miRNA:   3'- aaGUGCGU-----------UA---UGCaaGGCGGCG----UCGG- -5'
23861 3' -54 NC_005262.1 + 58190 0.66 0.816117
Target:  5'- gUCGCGaacauCGacgCCGCCGCGGUg -3'
miRNA:   3'- aAGUGCguuauGCaa-GGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 57699 0.66 0.806637
Target:  5'- gUUC-CGCAacGUGCGgaucaCCgagaagaagGCCGCGGCCu -3'
miRNA:   3'- -AAGuGCGU--UAUGCaa---GG---------CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 57335 0.69 0.637461
Target:  5'- -cCGCGuCGAUgccgGCGUcUCGCCGgAGCCg -3'
miRNA:   3'- aaGUGC-GUUA----UGCAaGGCGGCgUCGG- -5'
23861 3' -54 NC_005262.1 + 57275 0.7 0.57122
Target:  5'- cUCGCGCAGcucACGgcCCGCgUGCAGCa -3'
miRNA:   3'- aAGUGCGUUa--UGCaaGGCG-GCGUCGg -5'
23861 3' -54 NC_005262.1 + 55914 0.77 0.23008
Target:  5'- cUCGCGCAGUACGUcgaccgUCCggcgaucgaggGCgGCGGCCg -3'
miRNA:   3'- aAGUGCGUUAUGCA------AGG-----------CGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 55267 0.76 0.262127
Target:  5'- aUCACGCAcucgGCGUUCgGCCGCAucgGCa -3'
miRNA:   3'- aAGUGCGUua--UGCAAGgCGGCGU---CGg -5'
23861 3' -54 NC_005262.1 + 54780 0.68 0.691507
Target:  5'- gUUACGgGuucGUGCG-UCCGCCcuaucauGCGGCCg -3'
miRNA:   3'- aAGUGCgU---UAUGCaAGGCGG-------CGUCGG- -5'
23861 3' -54 NC_005262.1 + 54422 0.66 0.777129
Target:  5'- cUCGCGgAG-GCGcaggCCGCCGCGcgcGCCg -3'
miRNA:   3'- aAGUGCgUUaUGCaa--GGCGGCGU---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.