miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 5' -60.7 NC_005262.1 + 43141 0.68 0.344334
Target:  5'- uGGAucUGUgaggAGcCGGCAGCgGCCGGCAaGAUg -3'
miRNA:   3'- gUCU--ACG----UC-GCCGUCG-CGGCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 36269 0.68 0.344334
Target:  5'- -cGAUGCAGauGCgugGGCGCgCGGC-GACg -3'
miRNA:   3'- guCUACGUCgcCG---UCGCG-GCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 56631 0.67 0.35245
Target:  5'- -cGcgGUAGCGGCAuGCGgCCGGguGuuuCg -3'
miRNA:   3'- guCuaCGUCGCCGU-CGC-GGCCguCu--G- -5'
23861 5' -60.7 NC_005262.1 + 31375 0.67 0.3607
Target:  5'- -cGAUGaaacCGGCAGCGauGGCGGGCu -3'
miRNA:   3'- guCUACguc-GCCGUCGCggCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 51190 0.67 0.3607
Target:  5'- -cGAcGCGGCGGCccgcuGGaGCCGcGCGGGCg -3'
miRNA:   3'- guCUaCGUCGCCG-----UCgCGGC-CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 22113 0.67 0.3607
Target:  5'- aUAGAUGCcGauGcCGGUGCCGGCGG-Cg -3'
miRNA:   3'- -GUCUACGuCgcC-GUCGCGGCCGUCuG- -5'
23861 5' -60.7 NC_005262.1 + 29036 0.67 0.369084
Target:  5'- -cGA-GCu-CGaGCGGCGCCGGCAcGACg -3'
miRNA:   3'- guCUaCGucGC-CGUCGCGGCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 53430 0.67 0.369084
Target:  5'- aCGGAcgUGCuguuccuccagaAGC-GCGGCGCCGGCgucgaGGACa -3'
miRNA:   3'- -GUCU--ACG------------UCGcCGUCGCGGCCG-----UCUG- -5'
23861 5' -60.7 NC_005262.1 + 57529 0.67 0.376743
Target:  5'- gAGcUGCugaccaucaucgaGGCGGCAaagaccguGCGCgCGGCGGGCu -3'
miRNA:   3'- gUCuACG-------------UCGCCGU--------CGCG-GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 30137 0.67 0.386248
Target:  5'- ----cGCuGCuGGUcgccgaAGCGCCGGCGGAUg -3'
miRNA:   3'- gucuaCGuCG-CCG------UCGCGGCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 36639 0.67 0.386248
Target:  5'- --cAUGCGGCcGguGUGCCGGCAccaguaccaGACa -3'
miRNA:   3'- gucUACGUCGcCguCGCGGCCGU---------CUG- -5'
23861 5' -60.7 NC_005262.1 + 36803 0.67 0.386248
Target:  5'- cCAGu----GCGGC-GCGCuCGGCGGGCg -3'
miRNA:   3'- -GUCuacguCGCCGuCGCG-GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 54127 0.67 0.395025
Target:  5'- -cGGUGUuugcgcaggAGCGGCAGCGCC---AGACa -3'
miRNA:   3'- guCUACG---------UCGCCGUCGCGGccgUCUG- -5'
23861 5' -60.7 NC_005262.1 + 33677 0.66 0.401245
Target:  5'- ----aGCAGCGGCAcgaucgugggcuucGCGgCGGCcGGCg -3'
miRNA:   3'- gucuaCGUCGCCGU--------------CGCgGCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 17563 0.66 0.401245
Target:  5'- gCAGccGCGGCGGCGcGCgaagccgaggagaaGCUGGCGGcGCa -3'
miRNA:   3'- -GUCuaCGUCGCCGU-CG--------------CGGCCGUC-UG- -5'
23861 5' -60.7 NC_005262.1 + 4916 0.66 0.407527
Target:  5'- -cGcgGCAGCaGCcaacgcgcggagcuGCGCCGGCGuGACg -3'
miRNA:   3'- guCuaCGUCGcCGu-------------CGCGGCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 50645 0.66 0.412961
Target:  5'- aGGAguugUGCcGC-GCAGCGCgcgCGGCGGACc -3'
miRNA:   3'- gUCU----ACGuCGcCGUCGCG---GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 16573 0.66 0.412961
Target:  5'- gCGGAUGCcgAGCaGGCGcguGUGCUGGUcgAGGCg -3'
miRNA:   3'- -GUCUACG--UCG-CCGU---CGCGGCCG--UCUG- -5'
23861 5' -60.7 NC_005262.1 + 15087 0.66 0.419356
Target:  5'- cCAGAacgacgcgucuuucUGCGGC-GCGGCGuCCGGCuGGAa -3'
miRNA:   3'- -GUCU--------------ACGUCGcCGUCGC-GGCCG-UCUg -5'
23861 5' -60.7 NC_005262.1 + 30453 0.66 0.422115
Target:  5'- -cGAU-CGGCGGCacGGUGCCGcGCAgcGACg -3'
miRNA:   3'- guCUAcGUCGCCG--UCGCGGC-CGU--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.