miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 5' -60.7 NC_005262.1 + 26499 0.7 0.238821
Target:  5'- gAGcGUGCAGCaGCAGCGCUGGauGACc -3'
miRNA:   3'- gUC-UACGUCGcCGUCGCGGCCguCUG- -5'
23861 5' -60.7 NC_005262.1 + 45002 0.7 0.24431
Target:  5'- -cGcgGCAgGCGGCGGaCGCCaacacgcGGCAGAUg -3'
miRNA:   3'- guCuaCGU-CGCCGUC-GCGG-------CCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 57452 0.7 0.244926
Target:  5'- gCGGAUGCcGCGGCGGCGacgaUGGaggucgaGGGCg -3'
miRNA:   3'- -GUCUACGuCGCCGUCGCg---GCCg------UCUG- -5'
23861 5' -60.7 NC_005262.1 + 5017 0.7 0.244926
Target:  5'- uCGGcUGCcuccAGCGGCAGUugcucGCCGGCcGGCg -3'
miRNA:   3'- -GUCuACG----UCGCCGUCG-----CGGCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 208 0.7 0.253689
Target:  5'- cCGGcgGgGGCGGCGGagccagacacgcuacCGCCGGCGGcgGCg -3'
miRNA:   3'- -GUCuaCgUCGCCGUC---------------GCGGCCGUC--UG- -5'
23861 5' -60.7 NC_005262.1 + 47233 0.7 0.257523
Target:  5'- gCAGAUGUucgAGaUGGCauggaAGCGCCaGCAGGCg -3'
miRNA:   3'- -GUCUACG---UC-GCCG-----UCGCGGcCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 61126 0.69 0.269976
Target:  5'- ---uUGCuacGGCGGCcaggacgccgcccGGCGCCGcGCAGGCa -3'
miRNA:   3'- gucuACG---UCGCCG-------------UCGCGGC-CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 41206 0.69 0.270645
Target:  5'- -cGAUGUAGUuGaGCAGCGCCGcGCAuGCg -3'
miRNA:   3'- guCUACGUCG-C-CGUCGCGGC-CGUcUG- -5'
23861 5' -60.7 NC_005262.1 + 55022 0.69 0.270645
Target:  5'- ----cGCAcGCGGuCGGCGCgGGCAaGACg -3'
miRNA:   3'- gucuaCGU-CGCC-GUCGCGgCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 12318 0.69 0.270645
Target:  5'- aCGGcAUGCGGCucgugccGCAGCGCgCGGCGGcaGCa -3'
miRNA:   3'- -GUC-UACGUCGc------CGUCGCG-GCCGUC--UG- -5'
23861 5' -60.7 NC_005262.1 + 10481 0.69 0.270645
Target:  5'- aCAGcgGCgaccAGCaGCAGCGCCaGCAuGGCg -3'
miRNA:   3'- -GUCuaCG----UCGcCGUCGCGGcCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 17353 0.69 0.284299
Target:  5'- uCGGGUcCGGCgcgGGCGGCG-CGGCGGGCc -3'
miRNA:   3'- -GUCUAcGUCG---CCGUCGCgGCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 21682 0.69 0.291328
Target:  5'- ---cUG-AGCGGCGGCGCCGcgcugcuguacGCGGGCa -3'
miRNA:   3'- gucuACgUCGCCGUCGCGGC-----------CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 4575 0.68 0.305793
Target:  5'- ----cGcCAGCGGCGGCGCUGcuCGGGCg -3'
miRNA:   3'- gucuaC-GUCGCCGUCGCGGCc-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 13758 0.68 0.305793
Target:  5'- uCGGGaGCAGC--CGGCGCCGGCucGGGCu -3'
miRNA:   3'- -GUCUaCGUCGccGUCGCGGCCG--UCUG- -5'
23861 5' -60.7 NC_005262.1 + 15992 0.68 0.305793
Target:  5'- gAGAU-CGGCGuGCAGCGC-GGCAccGACg -3'
miRNA:   3'- gUCUAcGUCGC-CGUCGCGgCCGU--CUG- -5'
23861 5' -60.7 NC_005262.1 + 50935 0.68 0.313229
Target:  5'- --cGUGCA-CGGCAGCGCgaagcuCGGCAcGACg -3'
miRNA:   3'- gucUACGUcGCCGUCGCG------GCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 49853 0.68 0.316241
Target:  5'- -cGGUGcCGGCGGCGGUaccggaagcagcucaGCCGGcCGGAa -3'
miRNA:   3'- guCUAC-GUCGCCGUCG---------------CGGCC-GUCUg -5'
23861 5' -60.7 NC_005262.1 + 24205 0.68 0.320801
Target:  5'- aGGcgGCAGCcGCGacgcuGCGCCGGCAcGCc -3'
miRNA:   3'- gUCuaCGUCGcCGU-----CGCGGCCGUcUG- -5'
23861 5' -60.7 NC_005262.1 + 10019 0.68 0.328509
Target:  5'- gAGAUcaaGCAGaaGGUGGCaGCCGGaCAGACg -3'
miRNA:   3'- gUCUA---CGUCg-CCGUCG-CGGCC-GUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.