Results 1 - 20 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 62311 | 1.09 | 0.000285 |
Target: 5'- gCAGAUGCAGCGGCAGCGCCGGCAGACg -3' miRNA: 3'- -GUCUACGUCGCCGUCGCGGCCGUCUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 32174 | 0.76 | 0.086417 |
Target: 5'- cCAGAa--GGCGGCGGCGgCGGCAGAa -3' miRNA: 3'- -GUCUacgUCGCCGUCGCgGCCGUCUg -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 43850 | 0.76 | 0.091348 |
Target: 5'- ----cGCGGCGGU-GCGCCGGCAGGa -3' miRNA: 3'- gucuaCGUCGCCGuCGCGGCCGUCUg -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 49617 | 0.75 | 0.09843 |
Target: 5'- cCGGAUGgAGCGGCuugccgcacuccucGGCG-CGGCGGACa -3' miRNA: 3'- -GUCUACgUCGCCG--------------UCGCgGCCGUCUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 17253 | 0.75 | 0.104869 |
Target: 5'- gCGGGaGCGGCGGcCGGCGCCGcGCuGGGCu -3' miRNA: 3'- -GUCUaCGUCGCC-GUCGCGGC-CG-UCUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 33914 | 0.75 | 0.113863 |
Target: 5'- -cGAUcgGUAGCGGCGGUGCCgagcucgcGGCGGGCa -3' miRNA: 3'- guCUA--CGUCGCCGUCGCGG--------CCGUCUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 35222 | 0.74 | 0.126979 |
Target: 5'- aGGAUGCGGagguCGGCGGCGCgauCGGCAG-Cg -3' miRNA: 3'- gUCUACGUC----GCCGUCGCG---GCCGUCuG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 46648 | 0.73 | 0.141481 |
Target: 5'- -uGAUGgccgaCAGCGGCagcauGGCGCCGGCAccGACg -3' miRNA: 3'- guCUAC-----GUCGCCG-----UCGCGGCCGU--CUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 5066 | 0.73 | 0.157485 |
Target: 5'- gCAGGcccGCGGCGGCGGCGCgugcgaccggcuCGGCGGuGCg -3' miRNA: 3'- -GUCUa--CGUCGCCGUCGCG------------GCCGUC-UG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 52808 | 0.72 | 0.170543 |
Target: 5'- aGGAUucGCAGUGGCAgGCGCuCGGCGaGCg -3' miRNA: 3'- gUCUA--CGUCGCCGU-CGCG-GCCGUcUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 46912 | 0.72 | 0.175107 |
Target: 5'- gCGGuGUGguGCGGCccGGCGCgCGGcCGGGCg -3' miRNA: 3'- -GUC-UACguCGCCG--UCGCG-GCC-GUCUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 49219 | 0.71 | 0.189456 |
Target: 5'- uGGGUGCGGUGcGCgugAGCGCCgcGGCgAGACg -3' miRNA: 3'- gUCUACGUCGC-CG---UCGCGG--CCG-UCUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 35707 | 0.71 | 0.194464 |
Target: 5'- aAGAUGUAcCGGCAGUcguccaugucgaGCCGGCGGuACg -3' miRNA: 3'- gUCUACGUcGCCGUCG------------CGGCCGUC-UG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 7528 | 0.71 | 0.204828 |
Target: 5'- gCAGGUuCGGCGGC-GCGUCGGCGcgcucGACg -3' miRNA: 3'- -GUCUAcGUCGCCGuCGCGGCCGU-----CUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 61155 | 0.71 | 0.210188 |
Target: 5'- gCAGAUcGCGGCGGCGGgcgaGCUGaCGGGCg -3' miRNA: 3'- -GUCUA-CGUCGCCGUCg---CGGCcGUCUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 49174 | 0.71 | 0.215667 |
Target: 5'- uCGGccGCAGCGGC-GCGCaCGGC-GAUg -3' miRNA: 3'- -GUCuaCGUCGCCGuCGCG-GCCGuCUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 14008 | 0.71 | 0.215667 |
Target: 5'- -cGGUGCAggggcguccggcGCGGCAGCgGCCGGagccuCGGGCg -3' miRNA: 3'- guCUACGU------------CGCCGUCG-CGGCC-----GUCUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 12556 | 0.7 | 0.237015 |
Target: 5'- gCAGGUcGCGGCGGCGcucgucgagcugcuGCugccGCCGGCgAGGCg -3' miRNA: 3'- -GUCUA-CGUCGCCGU--------------CG----CGGCCG-UCUG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 12487 | 0.7 | 0.238218 |
Target: 5'- gCGGAUGCgcccaucuggucgAGCGGCaugcgcAGCaGCCGGCGGcCg -3' miRNA: 3'- -GUCUACG-------------UCGCCG------UCG-CGGCCGUCuG- -5' |
|||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 26499 | 0.7 | 0.238821 |
Target: 5'- gAGcGUGCAGCaGCAGCGCUGGauGACc -3' miRNA: 3'- gUC-UACGUCGcCGUCGCGGCCguCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home