miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 5' -60.7 NC_005262.1 + 4575 0.68 0.305793
Target:  5'- ----cGcCAGCGGCGGCGCUGcuCGGGCg -3'
miRNA:   3'- gucuaC-GUCGCCGUCGCGGCc-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 45002 0.7 0.24431
Target:  5'- -cGcgGCAgGCGGCGGaCGCCaacacgcGGCAGAUg -3'
miRNA:   3'- guCuaCGU-CGCCGUC-GCGG-------CCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 57452 0.7 0.244926
Target:  5'- gCGGAUGCcGCGGCGGCGacgaUGGaggucgaGGGCg -3'
miRNA:   3'- -GUCUACGuCGCCGUCGCg---GCCg------UCUG- -5'
23861 5' -60.7 NC_005262.1 + 5017 0.7 0.244926
Target:  5'- uCGGcUGCcuccAGCGGCAGUugcucGCCGGCcGGCg -3'
miRNA:   3'- -GUCuACG----UCGCCGUCG-----CGGCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 47233 0.7 0.257523
Target:  5'- gCAGAUGUucgAGaUGGCauggaAGCGCCaGCAGGCg -3'
miRNA:   3'- -GUCUACG---UC-GCCG-----UCGCGGcCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 10481 0.69 0.270645
Target:  5'- aCAGcgGCgaccAGCaGCAGCGCCaGCAuGGCg -3'
miRNA:   3'- -GUCuaCG----UCGcCGUCGCGGcCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 12318 0.69 0.270645
Target:  5'- aCGGcAUGCGGCucgugccGCAGCGCgCGGCGGcaGCa -3'
miRNA:   3'- -GUC-UACGUCGc------CGUCGCG-GCCGUC--UG- -5'
23861 5' -60.7 NC_005262.1 + 55022 0.69 0.270645
Target:  5'- ----cGCAcGCGGuCGGCGCgGGCAaGACg -3'
miRNA:   3'- gucuaCGU-CGCC-GUCGCGgCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 21682 0.69 0.291328
Target:  5'- ---cUG-AGCGGCGGCGCCGcgcugcuguacGCGGGCa -3'
miRNA:   3'- gucuACgUCGCCGUCGCGGC-----------CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 26499 0.7 0.238821
Target:  5'- gAGcGUGCAGCaGCAGCGCUGGauGACc -3'
miRNA:   3'- gUC-UACGUCGcCGUCGCGGCCguCUG- -5'
23861 5' -60.7 NC_005262.1 + 12556 0.7 0.237015
Target:  5'- gCAGGUcGCGGCGGCGcucgucgagcugcuGCugccGCCGGCgAGGCg -3'
miRNA:   3'- -GUCUA-CGUCGCCGU--------------CG----CGGCCG-UCUG- -5'
23861 5' -60.7 NC_005262.1 + 49174 0.71 0.215667
Target:  5'- uCGGccGCAGCGGC-GCGCaCGGC-GAUg -3'
miRNA:   3'- -GUCuaCGUCGCCGuCGCG-GCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 43850 0.76 0.091348
Target:  5'- ----cGCGGCGGU-GCGCCGGCAGGa -3'
miRNA:   3'- gucuaCGUCGCCGuCGCGGCCGUCUg -5'
23861 5' -60.7 NC_005262.1 + 33914 0.75 0.113863
Target:  5'- -cGAUcgGUAGCGGCGGUGCCgagcucgcGGCGGGCa -3'
miRNA:   3'- guCUA--CGUCGCCGUCGCGG--------CCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 35222 0.74 0.126979
Target:  5'- aGGAUGCGGagguCGGCGGCGCgauCGGCAG-Cg -3'
miRNA:   3'- gUCUACGUC----GCCGUCGCG---GCCGUCuG- -5'
23861 5' -60.7 NC_005262.1 + 46648 0.73 0.141481
Target:  5'- -uGAUGgccgaCAGCGGCagcauGGCGCCGGCAccGACg -3'
miRNA:   3'- guCUAC-----GUCGCCG-----UCGCGGCCGU--CUG- -5'
23861 5' -60.7 NC_005262.1 + 5066 0.73 0.157485
Target:  5'- gCAGGcccGCGGCGGCGGCGCgugcgaccggcuCGGCGGuGCg -3'
miRNA:   3'- -GUCUa--CGUCGCCGUCGCG------------GCCGUC-UG- -5'
23861 5' -60.7 NC_005262.1 + 52808 0.72 0.170543
Target:  5'- aGGAUucGCAGUGGCAgGCGCuCGGCGaGCg -3'
miRNA:   3'- gUCUA--CGUCGCCGU-CGCG-GCCGUcUG- -5'
23861 5' -60.7 NC_005262.1 + 7528 0.71 0.204828
Target:  5'- gCAGGUuCGGCGGC-GCGUCGGCGcgcucGACg -3'
miRNA:   3'- -GUCUAcGUCGCCGuCGCGGCCGU-----CUG- -5'
23861 5' -60.7 NC_005262.1 + 61155 0.71 0.210188
Target:  5'- gCAGAUcGCGGCGGCGGgcgaGCUGaCGGGCg -3'
miRNA:   3'- -GUCUA-CGUCGCCGUCg---CGGCcGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.