miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 5' -60.7 NC_005262.1 + 34082 0.66 0.450293
Target:  5'- uCGGAUGCuGCuuGGCccGGUGCgGGCGGuuGCg -3'
miRNA:   3'- -GUCUACGuCG--CCG--UCGCGgCCGUC--UG- -5'
23861 5' -60.7 NC_005262.1 + 57529 0.67 0.376743
Target:  5'- gAGcUGCugaccaucaucgaGGCGGCAaagaccguGCGCgCGGCGGGCu -3'
miRNA:   3'- gUCuACG-------------UCGCCGU--------CGCG-GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 22113 0.67 0.3607
Target:  5'- aUAGAUGCcGauGcCGGUGCCGGCGG-Cg -3'
miRNA:   3'- -GUCUACGuCgcC-GUCGCGGCCGUCuG- -5'
23861 5' -60.7 NC_005262.1 + 62311 1.09 0.000285
Target:  5'- gCAGAUGCAGCGGCAGCGCCGGCAGACg -3'
miRNA:   3'- -GUCUACGUCGCCGUCGCGGCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 41654 0.66 0.440784
Target:  5'- -cGAUGCGGgCaGCcGCGgCGGcCAGACg -3'
miRNA:   3'- guCUACGUC-GcCGuCGCgGCC-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 57491 0.66 0.440784
Target:  5'- gAGAgGCGGcCGGCgAGCGCaagaaGGCGG-Cg -3'
miRNA:   3'- gUCUaCGUC-GCCG-UCGCGg----CCGUCuG- -5'
23861 5' -60.7 NC_005262.1 + 35517 0.66 0.43139
Target:  5'- ----cGCauaGGCGaCAGCGCCGGCcguGACg -3'
miRNA:   3'- gucuaCG---UCGCcGUCGCGGCCGu--CUG- -5'
23861 5' -60.7 NC_005262.1 + 52361 0.66 0.425811
Target:  5'- gCGGgcGCGGCgugucgcgcaccuucGGCGGC-CCGGCGcGGCg -3'
miRNA:   3'- -GUCuaCGUCG---------------CCGUCGcGGCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 50645 0.66 0.412961
Target:  5'- aGGAguugUGCcGC-GCAGCGCgcgCGGCGGACc -3'
miRNA:   3'- gUCU----ACGuCGcCGUCGCG---GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 36639 0.67 0.386248
Target:  5'- --cAUGCGGCcGguGUGCCGGCAccaguaccaGACa -3'
miRNA:   3'- gucUACGUCGcCguCGCGGCCGU---------CUG- -5'
23861 5' -60.7 NC_005262.1 + 33677 0.66 0.401245
Target:  5'- ----aGCAGCGGCAcgaucgugggcuucGCGgCGGCcGGCg -3'
miRNA:   3'- gucuaCGUCGCCGU--------------CGCgGCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 15087 0.66 0.419356
Target:  5'- cCAGAacgacgcgucuuucUGCGGC-GCGGCGuCCGGCuGGAa -3'
miRNA:   3'- -GUCU--------------ACGUCGcCGUCGC-GGCCG-UCUg -5'
23861 5' -60.7 NC_005262.1 + 11907 0.66 0.450293
Target:  5'- -cGGUGCcguuCGGCGGCGUCGGCucGGuCg -3'
miRNA:   3'- guCUACGuc--GCCGUCGCGGCCG--UCuG- -5'
23861 5' -60.7 NC_005262.1 + 54127 0.67 0.395025
Target:  5'- -cGGUGUuugcgcaggAGCGGCAGCGCC---AGACa -3'
miRNA:   3'- guCUACG---------UCGCCGUCGCGGccgUCUG- -5'
23861 5' -60.7 NC_005262.1 + 1991 0.66 0.450293
Target:  5'- -cGA-GCGcgaGGCAuGCGCCGcGCAGGCg -3'
miRNA:   3'- guCUaCGUcg-CCGU-CGCGGC-CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 30453 0.66 0.422115
Target:  5'- -cGAU-CGGCGGCacGGUGCCGcGCAgcGACg -3'
miRNA:   3'- guCUAcGUCGCCG--UCGCGGC-CGU--CUG- -5'
23861 5' -60.7 NC_005262.1 + 36803 0.67 0.386248
Target:  5'- cCAGu----GCGGC-GCGCuCGGCGGGCg -3'
miRNA:   3'- -GUCuacguCGCCGuCGCG-GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 29036 0.67 0.369084
Target:  5'- -cGA-GCu-CGaGCGGCGCCGGCAcGACg -3'
miRNA:   3'- guCUaCGucGC-CGUCGCGGCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 44918 0.66 0.450293
Target:  5'- uGGAUGCGGCGcaaGGCGCUGcucCGGAUg -3'
miRNA:   3'- gUCUACGUCGCcg-UCGCGGCc--GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 12415 0.66 0.440784
Target:  5'- uCAGgcGCGGCcuuGGcCGGCGUCG-CGGACg -3'
miRNA:   3'- -GUCuaCGUCG---CC-GUCGCGGCcGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.