miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 5' -60.7 NC_005262.1 + 208 0.7 0.253689
Target:  5'- cCGGcgGgGGCGGCGGagccagacacgcuacCGCCGGCGGcgGCg -3'
miRNA:   3'- -GUCuaCgUCGCCGUC---------------GCGGCCGUC--UG- -5'
23861 5' -60.7 NC_005262.1 + 1991 0.66 0.450293
Target:  5'- -cGA-GCGcgaGGCAuGCGCCGcGCAGGCg -3'
miRNA:   3'- guCUaCGUcg-CCGU-CGCGGC-CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 4575 0.68 0.305793
Target:  5'- ----cGcCAGCGGCGGCGCUGcuCGGGCg -3'
miRNA:   3'- gucuaC-GUCGCCGUCGCGGCc-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 4916 0.66 0.407527
Target:  5'- -cGcgGCAGCaGCcaacgcgcggagcuGCGCCGGCGuGACg -3'
miRNA:   3'- guCuaCGUCGcCGu-------------CGCGGCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 5017 0.7 0.244926
Target:  5'- uCGGcUGCcuccAGCGGCAGUugcucGCCGGCcGGCg -3'
miRNA:   3'- -GUCuACG----UCGCCGUCG-----CGGCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 5066 0.73 0.157485
Target:  5'- gCAGGcccGCGGCGGCGGCGCgugcgaccggcuCGGCGGuGCg -3'
miRNA:   3'- -GUCUa--CGUCGCCGUCGCG------------GCCGUC-UG- -5'
23861 5' -60.7 NC_005262.1 + 7528 0.71 0.204828
Target:  5'- gCAGGUuCGGCGGC-GCGUCGGCGcgcucGACg -3'
miRNA:   3'- -GUCUAcGUCGCCGuCGCGGCCGU-----CUG- -5'
23861 5' -60.7 NC_005262.1 + 9122 0.66 0.440784
Target:  5'- ----cGCAGCGGCuaugaggaccGGCGCCGGgcCGGuCg -3'
miRNA:   3'- gucuaCGUCGCCG----------UCGCGGCC--GUCuG- -5'
23861 5' -60.7 NC_005262.1 + 10019 0.68 0.328509
Target:  5'- gAGAUcaaGCAGaaGGUGGCaGCCGGaCAGACg -3'
miRNA:   3'- gUCUA---CGUCg-CCGUCG-CGGCC-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 10481 0.69 0.270645
Target:  5'- aCAGcgGCgaccAGCaGCAGCGCCaGCAuGGCg -3'
miRNA:   3'- -GUCuaCG----UCGcCGUCGCGGcCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 11907 0.66 0.450293
Target:  5'- -cGGUGCcguuCGGCGGCGUCGGCucGGuCg -3'
miRNA:   3'- guCUACGuc--GCCGUCGCGGCCG--UCuG- -5'
23861 5' -60.7 NC_005262.1 + 12318 0.69 0.270645
Target:  5'- aCGGcAUGCGGCucgugccGCAGCGCgCGGCGGcaGCa -3'
miRNA:   3'- -GUC-UACGUCGc------CGUCGCG-GCCGUC--UG- -5'
23861 5' -60.7 NC_005262.1 + 12415 0.66 0.440784
Target:  5'- uCAGgcGCGGCcuuGGcCGGCGUCG-CGGACg -3'
miRNA:   3'- -GUCuaCGUCG---CC-GUCGCGGCcGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 12487 0.7 0.238218
Target:  5'- gCGGAUGCgcccaucuggucgAGCGGCaugcgcAGCaGCCGGCGGcCg -3'
miRNA:   3'- -GUCUACG-------------UCGCCG------UCG-CGGCCGUCuG- -5'
23861 5' -60.7 NC_005262.1 + 12556 0.7 0.237015
Target:  5'- gCAGGUcGCGGCGGCGcucgucgagcugcuGCugccGCCGGCgAGGCg -3'
miRNA:   3'- -GUCUA-CGUCGCCGU--------------CG----CGGCCG-UCUG- -5'
23861 5' -60.7 NC_005262.1 + 13758 0.68 0.305793
Target:  5'- uCGGGaGCAGC--CGGCGCCGGCucGGGCu -3'
miRNA:   3'- -GUCUaCGUCGccGUCGCGGCCG--UCUG- -5'
23861 5' -60.7 NC_005262.1 + 14008 0.71 0.215667
Target:  5'- -cGGUGCAggggcguccggcGCGGCAGCgGCCGGagccuCGGGCg -3'
miRNA:   3'- guCUACGU------------CGCCGUCG-CGGCC-----GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 14011 0.66 0.422115
Target:  5'- uGGAcccCAGCGuGCAGuCGCuUGGCGGACc -3'
miRNA:   3'- gUCUac-GUCGC-CGUC-GCG-GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 15087 0.66 0.419356
Target:  5'- cCAGAacgacgcgucuuucUGCGGC-GCGGCGuCCGGCuGGAa -3'
miRNA:   3'- -GUCU--------------ACGUCGcCGUCGC-GGCCG-UCUg -5'
23861 5' -60.7 NC_005262.1 + 15992 0.68 0.305793
Target:  5'- gAGAU-CGGCGuGCAGCGC-GGCAccGACg -3'
miRNA:   3'- gUCUAcGUCGC-CGUCGCGgCCGU--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.