miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 5' -60.7 NC_005262.1 + 16573 0.66 0.412961
Target:  5'- gCGGAUGCcgAGCaGGCGcguGUGCUGGUcgAGGCg -3'
miRNA:   3'- -GUCUACG--UCG-CCGU---CGCGGCCG--UCUG- -5'
23861 5' -60.7 NC_005262.1 + 17253 0.75 0.104869
Target:  5'- gCGGGaGCGGCGGcCGGCGCCGcGCuGGGCu -3'
miRNA:   3'- -GUCUaCGUCGCC-GUCGCGGC-CG-UCUG- -5'
23861 5' -60.7 NC_005262.1 + 17353 0.69 0.284299
Target:  5'- uCGGGUcCGGCgcgGGCGGCG-CGGCGGGCc -3'
miRNA:   3'- -GUCUAcGUCG---CCGUCGCgGCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 17563 0.66 0.401245
Target:  5'- gCAGccGCGGCGGCGcGCgaagccgaggagaaGCUGGCGGcGCa -3'
miRNA:   3'- -GUCuaCGUCGCCGU-CG--------------CGGCCGUC-UG- -5'
23861 5' -60.7 NC_005262.1 + 20586 0.66 0.43139
Target:  5'- -cGA-GCAGCGcGCGGCGCgCcGCAGGg -3'
miRNA:   3'- guCUaCGUCGC-CGUCGCG-GcCGUCUg -5'
23861 5' -60.7 NC_005262.1 + 20741 0.7 0.238821
Target:  5'- ----cGCGGCGcGCGGUGCCGGcCGGGu -3'
miRNA:   3'- gucuaCGUCGC-CGUCGCGGCC-GUCUg -5'
23861 5' -60.7 NC_005262.1 + 21682 0.69 0.291328
Target:  5'- ---cUG-AGCGGCGGCGCCGcgcugcuguacGCGGGCa -3'
miRNA:   3'- gucuACgUCGCCGUCGCGGC-----------CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 22113 0.67 0.3607
Target:  5'- aUAGAUGCcGauGcCGGUGCCGGCGG-Cg -3'
miRNA:   3'- -GUCUACGuCgcC-GUCGCGGCCGUCuG- -5'
23861 5' -60.7 NC_005262.1 + 23674 0.66 0.444574
Target:  5'- uGGAUGCcgcccgAGCGGCgcgugugggucuaccGGCGCaCGGUcGACc -3'
miRNA:   3'- gUCUACG------UCGCCG---------------UCGCG-GCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 24205 0.68 0.320801
Target:  5'- aGGcgGCAGCcGCGacgcuGCGCCGGCAcGCc -3'
miRNA:   3'- gUCuaCGUCGcCGU-----CGCGGCCGUcUG- -5'
23861 5' -60.7 NC_005262.1 + 26499 0.7 0.238821
Target:  5'- gAGcGUGCAGCaGCAGCGCUGGauGACc -3'
miRNA:   3'- gUC-UACGUCGcCGUCGCGGCCguCUG- -5'
23861 5' -60.7 NC_005262.1 + 29036 0.67 0.369084
Target:  5'- -cGA-GCu-CGaGCGGCGCCGGCAcGACg -3'
miRNA:   3'- guCUaCGucGC-CGUCGCGGCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 30137 0.67 0.386248
Target:  5'- ----cGCuGCuGGUcgccgaAGCGCCGGCGGAUg -3'
miRNA:   3'- gucuaCGuCG-CCG------UCGCGGCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 30453 0.66 0.422115
Target:  5'- -cGAU-CGGCGGCacGGUGCCGcGCAgcGACg -3'
miRNA:   3'- guCUAcGUCGCCG--UCGCGGC-CGU--CUG- -5'
23861 5' -60.7 NC_005262.1 + 31375 0.67 0.3607
Target:  5'- -cGAUGaaacCGGCAGCGauGGCGGGCu -3'
miRNA:   3'- guCUACguc-GCCGUCGCggCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 32174 0.76 0.086417
Target:  5'- cCAGAa--GGCGGCGGCGgCGGCAGAa -3'
miRNA:   3'- -GUCUacgUCGCCGUCGCgGCCGUCUg -5'
23861 5' -60.7 NC_005262.1 + 33677 0.66 0.401245
Target:  5'- ----aGCAGCGGCAcgaucgugggcuucGCGgCGGCcGGCg -3'
miRNA:   3'- gucuaCGUCGCCGU--------------CGCgGCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 33914 0.75 0.113863
Target:  5'- -cGAUcgGUAGCGGCGGUGCCgagcucgcGGCGGGCa -3'
miRNA:   3'- guCUA--CGUCGCCGUCGCGG--------CCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 34082 0.66 0.450293
Target:  5'- uCGGAUGCuGCuuGGCccGGUGCgGGCGGuuGCg -3'
miRNA:   3'- -GUCUACGuCG--CCG--UCGCGgCCGUC--UG- -5'
23861 5' -60.7 NC_005262.1 + 35222 0.74 0.126979
Target:  5'- aGGAUGCGGagguCGGCGGCGCgauCGGCAG-Cg -3'
miRNA:   3'- gUCUACGUC----GCCGUCGCG---GCCGUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.