miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 5' -60.7 NC_005262.1 + 62311 1.09 0.000285
Target:  5'- gCAGAUGCAGCGGCAGCGCCGGCAGACg -3'
miRNA:   3'- -GUCUACGUCGCCGUCGCGGCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 61453 0.66 0.450293
Target:  5'- aAGAagGCGGCGGaCGGCGaaGcGCuAGACg -3'
miRNA:   3'- gUCUa-CGUCGCC-GUCGCggC-CG-UCUG- -5'
23861 5' -60.7 NC_005262.1 + 61155 0.71 0.210188
Target:  5'- gCAGAUcGCGGCGGCGGgcgaGCUGaCGGGCg -3'
miRNA:   3'- -GUCUA-CGUCGCCGUCg---CGGCcGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 61126 0.69 0.269976
Target:  5'- ---uUGCuacGGCGGCcaggacgccgcccGGCGCCGcGCAGGCa -3'
miRNA:   3'- gucuACG---UCGCCG-------------UCGCGGC-CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 57529 0.67 0.376743
Target:  5'- gAGcUGCugaccaucaucgaGGCGGCAaagaccguGCGCgCGGCGGGCu -3'
miRNA:   3'- gUCuACG-------------UCGCCGU--------CGCG-GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 57491 0.66 0.440784
Target:  5'- gAGAgGCGGcCGGCgAGCGCaagaaGGCGG-Cg -3'
miRNA:   3'- gUCUaCGUC-GCCG-UCGCGg----CCGUCuG- -5'
23861 5' -60.7 NC_005262.1 + 57452 0.7 0.244926
Target:  5'- gCGGAUGCcGCGGCGGCGacgaUGGaggucgaGGGCg -3'
miRNA:   3'- -GUCUACGuCGCCGUCGCg---GCCg------UCUG- -5'
23861 5' -60.7 NC_005262.1 + 56631 0.67 0.35245
Target:  5'- -cGcgGUAGCGGCAuGCGgCCGGguGuuuCg -3'
miRNA:   3'- guCuaCGUCGCCGU-CGC-GGCCguCu--G- -5'
23861 5' -60.7 NC_005262.1 + 55022 0.69 0.270645
Target:  5'- ----cGCAcGCGGuCGGCGCgGGCAaGACg -3'
miRNA:   3'- gucuaCGU-CGCC-GUCGCGgCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 54127 0.67 0.395025
Target:  5'- -cGGUGUuugcgcaggAGCGGCAGCGCC---AGACa -3'
miRNA:   3'- guCUACG---------UCGCCGUCGCGGccgUCUG- -5'
23861 5' -60.7 NC_005262.1 + 53430 0.67 0.369084
Target:  5'- aCGGAcgUGCuguuccuccagaAGC-GCGGCGCCGGCgucgaGGACa -3'
miRNA:   3'- -GUCU--ACG------------UCGcCGUCGCGGCCG-----UCUG- -5'
23861 5' -60.7 NC_005262.1 + 52808 0.72 0.170543
Target:  5'- aGGAUucGCAGUGGCAgGCGCuCGGCGaGCg -3'
miRNA:   3'- gUCUA--CGUCGCCGU-CGCG-GCCGUcUG- -5'
23861 5' -60.7 NC_005262.1 + 52361 0.66 0.425811
Target:  5'- gCGGgcGCGGCgugucgcgcaccuucGGCGGC-CCGGCGcGGCg -3'
miRNA:   3'- -GUCuaCGUCG---------------CCGUCGcGGCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 51190 0.67 0.3607
Target:  5'- -cGAcGCGGCGGCccgcuGGaGCCGcGCGGGCg -3'
miRNA:   3'- guCUaCGUCGCCG-----UCgCGGC-CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 50935 0.68 0.313229
Target:  5'- --cGUGCA-CGGCAGCGCgaagcuCGGCAcGACg -3'
miRNA:   3'- gucUACGUcGCCGUCGCG------GCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 50645 0.66 0.412961
Target:  5'- aGGAguugUGCcGC-GCAGCGCgcgCGGCGGACc -3'
miRNA:   3'- gUCU----ACGuCGcCGUCGCG---GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 49853 0.68 0.316241
Target:  5'- -cGGUGcCGGCGGCGGUaccggaagcagcucaGCCGGcCGGAa -3'
miRNA:   3'- guCUAC-GUCGCCGUCG---------------CGGCC-GUCUg -5'
23861 5' -60.7 NC_005262.1 + 49617 0.75 0.09843
Target:  5'- cCGGAUGgAGCGGCuugccgcacuccucGGCG-CGGCGGACa -3'
miRNA:   3'- -GUCUACgUCGCCG--------------UCGCgGCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 49219 0.71 0.189456
Target:  5'- uGGGUGCGGUGcGCgugAGCGCCgcGGCgAGACg -3'
miRNA:   3'- gUCUACGUCGC-CG---UCGCGG--CCG-UCUG- -5'
23861 5' -60.7 NC_005262.1 + 49174 0.71 0.215667
Target:  5'- uCGGccGCAGCGGC-GCGCaCGGC-GAUg -3'
miRNA:   3'- -GUCuaCGUCGCCGuCGCG-GCCGuCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.