Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 4916 | 0.66 | 0.407527 |
Target: 5'- -cGcgGCAGCaGCcaacgcgcggagcuGCGCCGGCGuGACg -3' miRNA: 3'- guCuaCGUCGcCGu-------------CGCGGCCGU-CUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 33677 | 0.66 | 0.401245 |
Target: 5'- ----aGCAGCGGCAcgaucgugggcuucGCGgCGGCcGGCg -3' miRNA: 3'- gucuaCGUCGCCGU--------------CGCgGCCGuCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 17563 | 0.66 | 0.401245 |
Target: 5'- gCAGccGCGGCGGCGcGCgaagccgaggagaaGCUGGCGGcGCa -3' miRNA: 3'- -GUCuaCGUCGCCGU-CG--------------CGGCCGUC-UG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 54127 | 0.67 | 0.395025 |
Target: 5'- -cGGUGUuugcgcaggAGCGGCAGCGCC---AGACa -3' miRNA: 3'- guCUACG---------UCGCCGUCGCGGccgUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 36803 | 0.67 | 0.386248 |
Target: 5'- cCAGu----GCGGC-GCGCuCGGCGGGCg -3' miRNA: 3'- -GUCuacguCGCCGuCGCG-GCCGUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 36639 | 0.67 | 0.386248 |
Target: 5'- --cAUGCGGCcGguGUGCCGGCAccaguaccaGACa -3' miRNA: 3'- gucUACGUCGcCguCGCGGCCGU---------CUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 30137 | 0.67 | 0.386248 |
Target: 5'- ----cGCuGCuGGUcgccgaAGCGCCGGCGGAUg -3' miRNA: 3'- gucuaCGuCG-CCG------UCGCGGCCGUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 57529 | 0.67 | 0.376743 |
Target: 5'- gAGcUGCugaccaucaucgaGGCGGCAaagaccguGCGCgCGGCGGGCu -3' miRNA: 3'- gUCuACG-------------UCGCCGU--------CGCG-GCCGUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 53430 | 0.67 | 0.369084 |
Target: 5'- aCGGAcgUGCuguuccuccagaAGC-GCGGCGCCGGCgucgaGGACa -3' miRNA: 3'- -GUCU--ACG------------UCGcCGUCGCGGCCG-----UCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 29036 | 0.67 | 0.369084 |
Target: 5'- -cGA-GCu-CGaGCGGCGCCGGCAcGACg -3' miRNA: 3'- guCUaCGucGC-CGUCGCGGCCGU-CUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 22113 | 0.67 | 0.3607 |
Target: 5'- aUAGAUGCcGauGcCGGUGCCGGCGG-Cg -3' miRNA: 3'- -GUCUACGuCgcC-GUCGCGGCCGUCuG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 31375 | 0.67 | 0.3607 |
Target: 5'- -cGAUGaaacCGGCAGCGauGGCGGGCu -3' miRNA: 3'- guCUACguc-GCCGUCGCggCCGUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 51190 | 0.67 | 0.3607 |
Target: 5'- -cGAcGCGGCGGCccgcuGGaGCCGcGCGGGCg -3' miRNA: 3'- guCUaCGUCGCCG-----UCgCGGC-CGUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 56631 | 0.67 | 0.35245 |
Target: 5'- -cGcgGUAGCGGCAuGCGgCCGGguGuuuCg -3' miRNA: 3'- guCuaCGUCGCCGU-CGC-GGCCguCu--G- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 43141 | 0.68 | 0.344334 |
Target: 5'- uGGAucUGUgaggAGcCGGCAGCgGCCGGCAaGAUg -3' miRNA: 3'- gUCU--ACG----UC-GCCGUCG-CGGCCGU-CUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 36269 | 0.68 | 0.344334 |
Target: 5'- -cGAUGCAGauGCgugGGCGCgCGGC-GACg -3' miRNA: 3'- guCUACGUCgcCG---UCGCG-GCCGuCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 10019 | 0.68 | 0.328509 |
Target: 5'- gAGAUcaaGCAGaaGGUGGCaGCCGGaCAGACg -3' miRNA: 3'- gUCUA---CGUCg-CCGUCG-CGGCC-GUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 24205 | 0.68 | 0.320801 |
Target: 5'- aGGcgGCAGCcGCGacgcuGCGCCGGCAcGCc -3' miRNA: 3'- gUCuaCGUCGcCGU-----CGCGGCCGUcUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 49853 | 0.68 | 0.316241 |
Target: 5'- -cGGUGcCGGCGGCGGUaccggaagcagcucaGCCGGcCGGAa -3' miRNA: 3'- guCUAC-GUCGCCGUCG---------------CGGCC-GUCUg -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 50935 | 0.68 | 0.313229 |
Target: 5'- --cGUGCA-CGGCAGCGCgaagcuCGGCAcGACg -3' miRNA: 3'- gucUACGUcGCCGUCGCG------GCCGU-CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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