miRNA display CGI


Results 41 - 60 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 5' -54.3 NC_005262.1 + 1146 0.66 0.782205
Target:  5'- gGGCUUCG---AUGCuGCCGcGCGGGCu -3'
miRNA:   3'- -CCGAAGUggaUGCGcUGGUuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 26855 0.66 0.782205
Target:  5'- aGCUUCugCUggccucucccgcACGgucaCGAUCGAGUGGGCc -3'
miRNA:   3'- cCGAAGugGA------------UGC----GCUGGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 32978 0.66 0.782205
Target:  5'- cGGCgugaagaUCACgguCGCGGCgCAGacGCAGGCa -3'
miRNA:   3'- -CCGa------AGUGgauGCGCUG-GUU--CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 13096 0.66 0.781215
Target:  5'- aGGUcugCGCCUucucGCGCGAgCCGAaccacuugcccgcGUAGGCg -3'
miRNA:   3'- -CCGaa-GUGGA----UGCGCU-GGUU-------------CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 34462 0.67 0.772234
Target:  5'- gGGCUgcccggaGCCUACgGCGuuCGAGCAcauccgcgcGGCg -3'
miRNA:   3'- -CCGAag-----UGGAUG-CGCugGUUCGU---------CCG- -5'
23862 5' -54.3 NC_005262.1 + 28018 0.67 0.772234
Target:  5'- cGGCgagCcgAUCUACGCGggcGCCGagAGCuGGCg -3'
miRNA:   3'- -CCGaa-G--UGGAUGCGC---UGGU--UCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 53833 0.67 0.772234
Target:  5'- aGCUgacgCACCgGCGCGGCgcggacggCAAGCAGaucGCg -3'
miRNA:   3'- cCGAa---GUGGaUGCGCUG--------GUUCGUC---CG- -5'
23862 5' -54.3 NC_005262.1 + 30593 0.67 0.772234
Target:  5'- uGGCgcucgUCGuCCUGCGuCGGCgCAaaguGGUAGGUc -3'
miRNA:   3'- -CCGa----AGU-GGAUGC-GCUG-GU----UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 30388 0.67 0.772234
Target:  5'- cGGCgggaacguggCGCCU--GCGACCuuGAGCuGGGCg -3'
miRNA:   3'- -CCGaa--------GUGGAugCGCUGG--UUCG-UCCG- -5'
23862 5' -54.3 NC_005262.1 + 19809 0.67 0.76212
Target:  5'- aGCgaccaUCGCCcGCGCGAUCAcgcGCAGaGCc -3'
miRNA:   3'- cCGa----AGUGGaUGCGCUGGUu--CGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 34960 0.67 0.761101
Target:  5'- uGCUggaUCAUCUggaucgaGCGCGACgCGAGCucgagaugcgcGGGCg -3'
miRNA:   3'- cCGA---AGUGGA-------UGCGCUG-GUUCG-----------UCCG- -5'
23862 5' -54.3 NC_005262.1 + 40224 0.67 0.751874
Target:  5'- cGGCgaUCuCCUGCGC--CCGcgcgcGGCGGGCg -3'
miRNA:   3'- -CCGa-AGuGGAUGCGcuGGU-----UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 45710 0.67 0.751874
Target:  5'- cGGCa--GCCggcCGUGAUCGAGCAguucGGCa -3'
miRNA:   3'- -CCGaagUGGau-GCGCUGGUUCGU----CCG- -5'
23862 5' -54.3 NC_005262.1 + 53906 0.67 0.751874
Target:  5'- uGGaCgggUCugCgcgACGCGcUgAAGCAGGCg -3'
miRNA:   3'- -CC-Ga--AGugGa--UGCGCuGgUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 4435 0.67 0.751874
Target:  5'- gGGCUUCACg-GgGCGGCUc--CGGGCg -3'
miRNA:   3'- -CCGAAGUGgaUgCGCUGGuucGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 26107 0.67 0.745667
Target:  5'- uGCUUCACCUucugggacaucggcaACaGCGAC--GGCAcGGCa -3'
miRNA:   3'- cCGAAGUGGA---------------UG-CGCUGguUCGU-CCG- -5'
23862 5' -54.3 NC_005262.1 + 47626 0.67 0.741506
Target:  5'- gGGCUUCucgcggcuGCCggaggACaagaagcgcgagGCGAUCGAGCAGGa -3'
miRNA:   3'- -CCGAAG--------UGGa----UG------------CGCUGGUUCGUCCg -5'
23862 5' -54.3 NC_005262.1 + 17275 0.67 0.741506
Target:  5'- cGCUgggCugCUGCGCGGgCAGG--GGCg -3'
miRNA:   3'- cCGAa--GugGAUGCGCUgGUUCguCCG- -5'
23862 5' -54.3 NC_005262.1 + 6556 0.67 0.741506
Target:  5'- aGGUugUUCACCUgauuggcgGCGCGcgucgcgaugccGCCGaccGGCAGGUc -3'
miRNA:   3'- -CCG--AAGUGGA--------UGCGC------------UGGU---UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 44370 0.67 0.741506
Target:  5'- cGCUUCAgaUGcCGCGACUgcGgGGGCa -3'
miRNA:   3'- cCGAAGUggAU-GCGCUGGuuCgUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.