miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 5' -54.3 NC_005262.1 + 44293 0.66 0.801672
Target:  5'- aGCgUUCGCCUACcCGuucauCCAGuGCGGGUu -3'
miRNA:   3'- cCG-AAGUGGAUGcGCu----GGUU-CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 17913 0.66 0.801672
Target:  5'- cGGCgagcCGCCgaucgGCGcCGACgccaacggCGAGCAGGUc -3'
miRNA:   3'- -CCGaa--GUGGa----UGC-GCUG--------GUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 34344 0.66 0.801672
Target:  5'- cGGCg--ACCUGCGCcucuGCCGcagccuuGCGGGCc -3'
miRNA:   3'- -CCGaagUGGAUGCGc---UGGUu------CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 28818 0.66 0.801672
Target:  5'- cGGCU--GCCUGgagcuucgacuUGCGGCCGAGCGccGCg -3'
miRNA:   3'- -CCGAagUGGAU-----------GCGCUGGUUCGUc-CG- -5'
23862 5' -54.3 NC_005262.1 + 18834 0.66 0.801672
Target:  5'- cGGCccUCGCCUcgGCGGCCAucuGCuccugacgcucgGGGCu -3'
miRNA:   3'- -CCGa-AGUGGAugCGCUGGUu--CG------------UCCG- -5'
23862 5' -54.3 NC_005262.1 + 4844 0.66 0.801672
Target:  5'- cGGCUgguucgaCugCUGCGCGccgACCGAGaAGcGCg -3'
miRNA:   3'- -CCGAa------GugGAUGCGC---UGGUUCgUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 42421 0.66 0.801672
Target:  5'- aGGCggCGCCaGC-CGGCCGcaacaucacgaAGCAGcGCa -3'
miRNA:   3'- -CCGaaGUGGaUGcGCUGGU-----------UCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 33277 0.66 0.792994
Target:  5'- uGCUUCGCCcaggucgGCGaCGACCAucucgugcgccugacGCAGGa -3'
miRNA:   3'- cCGAAGUGGa------UGC-GCUGGUu--------------CGUCCg -5'
23862 5' -54.3 NC_005262.1 + 60493 0.66 0.792022
Target:  5'- gGGCgagaCGCCgggccGCGCGGC---GCAGGCc -3'
miRNA:   3'- -CCGaa--GUGGa----UGCGCUGguuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 36628 0.66 0.792022
Target:  5'- cGGCaccaCACC-AUGCGGCCGguguGCcGGCa -3'
miRNA:   3'- -CCGaa--GUGGaUGCGCUGGUu---CGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 10496 0.66 0.792022
Target:  5'- aGCagCGCCaGCaugGCGGCCAgcAGCAGcGCg -3'
miRNA:   3'- cCGaaGUGGaUG---CGCUGGU--UCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 16050 0.66 0.792022
Target:  5'- cGGgUUCGCC---GCGGCCG-GCGGcGCa -3'
miRNA:   3'- -CCgAAGUGGaugCGCUGGUuCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 3729 0.66 0.792022
Target:  5'- gGGCcugCGCCUggauggguuccGCGCGGCU---CAGGCg -3'
miRNA:   3'- -CCGaa-GUGGA-----------UGCGCUGGuucGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 51180 0.66 0.791047
Target:  5'- aGGCa--GCCgacgACGCGgcggcccgcuggaGCCGcGCGGGCg -3'
miRNA:   3'- -CCGaagUGGa---UGCGC-------------UGGUuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 38798 0.66 0.789094
Target:  5'- aGGUUUCcagACC-GCGCucgaaugccgccucGACCAAGCcGGCc -3'
miRNA:   3'- -CCGAAG---UGGaUGCG--------------CUGGUUCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 21029 0.66 0.788114
Target:  5'- gGGCUg-GCCguccguCGCGACCAcgaucgucgugccGUAGGCg -3'
miRNA:   3'- -CCGAagUGGau----GCGCUGGUu------------CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 11656 0.66 0.782205
Target:  5'- cGGCgUCGCgCUgcACGCuGGCCG-GCAGaGCu -3'
miRNA:   3'- -CCGaAGUG-GA--UGCG-CUGGUuCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 26855 0.66 0.782205
Target:  5'- aGCUUCugCUggccucucccgcACGgucaCGAUCGAGUGGGCc -3'
miRNA:   3'- cCGAAGugGA------------UGC----GCUGGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 50017 0.66 0.782205
Target:  5'- cGGCgccCACCgaaGUGAagcCCGAGCcGGCg -3'
miRNA:   3'- -CCGaa-GUGGaugCGCU---GGUUCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 32978 0.66 0.782205
Target:  5'- cGGCgugaagaUCACgguCGCGGCgCAGacGCAGGCa -3'
miRNA:   3'- -CCGa------AGUGgauGCGCUG-GUU--CGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.