Results 21 - 40 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23862 | 5' | -54.3 | NC_005262.1 | + | 44147 | 0.7 | 0.546658 |
Target: 5'- cGGCcggaCGCgcGCGCGAUCGGGCAGGa -3' miRNA: 3'- -CCGaa--GUGgaUGCGCUGGUUCGUCCg -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 5196 | 0.71 | 0.514917 |
Target: 5'- gGGCgcgGCCgGCGCGACCGAG--GGCg -3' miRNA: 3'- -CCGaagUGGaUGCGCUGGUUCguCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 40509 | 0.73 | 0.397937 |
Target: 5'- cGGCaccaUCgACCUGCGCGACaaguucaucgucgcGGCGGGCg -3' miRNA: 3'- -CCGa---AG-UGGAUGCGCUGgu------------UCGUCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 28285 | 0.74 | 0.382652 |
Target: 5'- cGGCgcugUCGCCUAUGCG-CgCAAGCgcgugcgcaugaucgAGGCa -3' miRNA: 3'- -CCGa---AGUGGAUGCGCuG-GUUCG---------------UCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 54952 | 0.74 | 0.350761 |
Target: 5'- cGCUUCaACCUGCGCGaaaaccagaagcgcGCCAucuGGCGcGGCa -3' miRNA: 3'- cCGAAG-UGGAUGCGC--------------UGGU---UCGU-CCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 45386 | 0.74 | 0.344944 |
Target: 5'- gGGUagCAUCUGgGCGGCgCAgcAGCAGGCa -3' miRNA: 3'- -CCGaaGUGGAUgCGCUG-GU--UCGUCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 44102 | 0.75 | 0.320805 |
Target: 5'- cGGCUgaUCGCCUGgGCGAaaGAGCGcaucGGCg -3' miRNA: 3'- -CCGA--AGUGGAUgCGCUggUUCGU----CCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 2647 | 0.75 | 0.320805 |
Target: 5'- cGGCccaUGCCUGCGCGgcGCCGGGC-GGCg -3' miRNA: 3'- -CCGaa-GUGGAUGCGC--UGGUUCGuCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 50163 | 0.76 | 0.256078 |
Target: 5'- cGCgacCGCCUGCGCuaccuGACgAAGCAGGCc -3' miRNA: 3'- cCGaa-GUGGAUGCG-----CUGgUUCGUCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 41385 | 0.79 | 0.186867 |
Target: 5'- cGGCUg-ACCUACGCGACCGcuucaucgucGGCGccGGCa -3' miRNA: 3'- -CCGAagUGGAUGCGCUGGU----------UCGU--CCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 4544 | 0.73 | 0.400675 |
Target: 5'- gGGCUUCAUCgUGCGCGcgcggcgcaucucgcGCCAgcGGCGGcGCu -3' miRNA: 3'- -CCGAAGUGG-AUGCGC---------------UGGU--UCGUC-CG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 32879 | 0.73 | 0.406187 |
Target: 5'- aGCUguUCGCCgcgucgaACGuCGGCCAAGCcGGCg -3' miRNA: 3'- cCGA--AGUGGa------UGC-GCUGGUUCGuCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 16556 | 0.71 | 0.5045 |
Target: 5'- cGCUcccguUCACggcCGCGgauGCCGAGCAGGCg -3' miRNA: 3'- cCGA-----AGUGgauGCGC---UGGUUCGUCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 43977 | 0.72 | 0.483949 |
Target: 5'- aGGC-UCugC-GCGUGAUCGcGCGGGCg -3' miRNA: 3'- -CCGaAGugGaUGCGCUGGUuCGUCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 4821 | 0.72 | 0.473824 |
Target: 5'- uGGUUUCGCCgGCGCGAC---GCAGuGCc -3' miRNA: 3'- -CCGAAGUGGaUGCGCUGguuCGUC-CG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 52952 | 0.72 | 0.444113 |
Target: 5'- gGGCUUCGCCg--GCGGCaaggugcuCGAGcCGGGCa -3' miRNA: 3'- -CCGAAGUGGaugCGCUG--------GUUC-GUCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 61798 | 0.73 | 0.424897 |
Target: 5'- -uUUUCGCCUGCGCGGCgCAuGCcucGGCg -3' miRNA: 3'- ccGAAGUGGAUGCGCUG-GUuCGu--CCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 32311 | 0.73 | 0.424897 |
Target: 5'- aGGCagCGCgUGCGCuguucaugGGCCGucaGGCAGGCg -3' miRNA: 3'- -CCGaaGUGgAUGCG--------CUGGU---UCGUCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 47128 | 0.73 | 0.41923 |
Target: 5'- cGGCUUCAacgucaagcucaaggUCgACGCGACC-GGCgAGGCg -3' miRNA: 3'- -CCGAAGU---------------GGaUGCGCUGGuUCG-UCCG- -5' |
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23862 | 5' | -54.3 | NC_005262.1 | + | 21307 | 0.73 | 0.413609 |
Target: 5'- cGGCUgcucaccaacccCACCUACGCGcacguCCAGG-AGGCg -3' miRNA: 3'- -CCGAa-----------GUGGAUGCGCu----GGUUCgUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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