miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 5' -54.3 NC_005262.1 + 6556 0.67 0.741506
Target:  5'- aGGUugUUCACCUgauuggcgGCGCGcgucgcgaugccGCCGaccGGCAGGUc -3'
miRNA:   3'- -CCG--AAGUGGA--------UGCGC------------UGGU---UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 8146 0.7 0.589874
Target:  5'- cGGCgu-GCCggACGCGGCCAcgAGCGcgcGGCc -3'
miRNA:   3'- -CCGaagUGGa-UGCGCUGGU--UCGU---CCG- -5'
23862 5' -54.3 NC_005262.1 + 8576 0.76 0.283431
Target:  5'- aGCgcgGCCUGCGCGACgAAGCGacGGCg -3'
miRNA:   3'- cCGaagUGGAUGCGCUGgUUCGU--CCG- -5'
23862 5' -54.3 NC_005262.1 + 10231 0.66 0.820435
Target:  5'- cGGUcagCGCgUGCGCG-CCGAGCAccaucucggGGUa -3'
miRNA:   3'- -CCGaa-GUGgAUGCGCuGGUUCGU---------CCG- -5'
23862 5' -54.3 NC_005262.1 + 10405 0.68 0.70979
Target:  5'- cGGCgUUguCCUugaACGCGGUCugcGGCAGGCg -3'
miRNA:   3'- -CCG-AAguGGA---UGCGCUGGu--UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 10496 0.66 0.792022
Target:  5'- aGCagCGCCaGCaugGCGGCCAgcAGCAGcGCg -3'
miRNA:   3'- cCGaaGUGGaUG---CGCUGGU--UCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 10542 0.69 0.600786
Target:  5'- cGGCUaUGCCgACGCGACCGGccGCGcGCa -3'
miRNA:   3'- -CCGAaGUGGaUGCGCUGGUU--CGUcCG- -5'
23862 5' -54.3 NC_005262.1 + 10838 0.69 0.633647
Target:  5'- cGGCUcgagCACCUugcCGcCGGCgAAGCccAGGCg -3'
miRNA:   3'- -CCGAa---GUGGAu--GC-GCUGgUUCG--UCCG- -5'
23862 5' -54.3 NC_005262.1 + 11063 0.68 0.70979
Target:  5'- aGCgUCGCCUGagcccgaGCGGCCAaagGGC-GGCc -3'
miRNA:   3'- cCGaAGUGGAUg------CGCUGGU---UCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 11656 0.66 0.782205
Target:  5'- cGGCgUCGCgCUgcACGCuGGCCG-GCAGaGCu -3'
miRNA:   3'- -CCGaAGUG-GA--UGCG-CUGGUuCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 12371 0.7 0.578997
Target:  5'- cGGUaUCGCCcucGCGCGcgccGCCGAGCAcGCg -3'
miRNA:   3'- -CCGaAGUGGa--UGCGC----UGGUUCGUcCG- -5'
23862 5' -54.3 NC_005262.1 + 12432 0.69 0.600786
Target:  5'- cGGCgUCGCggacgGCGCGguGCCGAGCugcauGGCg -3'
miRNA:   3'- -CCGaAGUGga---UGCGC--UGGUUCGu----CCG- -5'
23862 5' -54.3 NC_005262.1 + 12513 0.69 0.627068
Target:  5'- cGCUUCagauGCCgcgcgACGCGAUCGccuccauguugcggcGGCAGGUc -3'
miRNA:   3'- cCGAAG----UGGa----UGCGCUGGU---------------UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 12594 0.76 0.283431
Target:  5'- aGCaUCGCCcGCGCGGCUccAGCGGGCc -3'
miRNA:   3'- cCGaAGUGGaUGCGCUGGu-UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 13096 0.66 0.781215
Target:  5'- aGGUcugCGCCUucucGCGCGAgCCGAaccacuugcccgcGUAGGCg -3'
miRNA:   3'- -CCGaa-GUGGA----UGCGCU-GGUU-------------CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 13466 0.74 0.360894
Target:  5'- cGCUUCGuCCUGCGCGGCgGgcgcugcGGCcGGCu -3'
miRNA:   3'- cCGAAGU-GGAUGCGCUGgU-------UCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 13513 0.72 0.463807
Target:  5'- cGGCcgUCACggGCuCGGCCGGcGCGGGCg -3'
miRNA:   3'- -CCGa-AGUGgaUGcGCUGGUU-CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 13697 0.72 0.483949
Target:  5'- cGGCUUCugUUcGCGCGGCgCGGGUucggucGGCg -3'
miRNA:   3'- -CCGAAGugGA-UGCGCUG-GUUCGu-----CCG- -5'
23862 5' -54.3 NC_005262.1 + 13781 0.82 0.120494
Target:  5'- gGGCUUCACUUcggugggcgccgGCGCGGCUucaucggcggGAGCGGGCg -3'
miRNA:   3'- -CCGAAGUGGA------------UGCGCUGG----------UUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 13979 0.71 0.525419
Target:  5'- cGCUcCAUC-GCGCGGCCGAuCGGGCc -3'
miRNA:   3'- cCGAaGUGGaUGCGCUGGUUcGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.