miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 5' -54.3 NC_005262.1 + 987 0.69 0.644611
Target:  5'- uGGCg--ACCUGCGgGGCgGGGCGGuGUa -3'
miRNA:   3'- -CCGaagUGGAUGCgCUGgUUCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 1146 0.66 0.782205
Target:  5'- gGGCUUCG---AUGCuGCCGcGCGGGCu -3'
miRNA:   3'- -CCGAAGUggaUGCGcUGGUuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 1535 0.68 0.677393
Target:  5'- uGCgugaacagCGCCagcguUGCGCGACCAucugcGUAGGCu -3'
miRNA:   3'- cCGaa------GUGG-----AUGCGCUGGUu----CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 1887 0.69 0.644611
Target:  5'- cGGCgcagC-CCUGCgGCGuAUCGucAGCAGGCa -3'
miRNA:   3'- -CCGaa--GuGGAUG-CGC-UGGU--UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 2485 0.67 0.720453
Target:  5'- uGGUgcCGCgCUugGCGACC-AGCAG-Ca -3'
miRNA:   3'- -CCGaaGUG-GAugCGCUGGuUCGUCcG- -5'
23862 5' -54.3 NC_005262.1 + 2647 0.75 0.320805
Target:  5'- cGGCccaUGCCUGCGCGgcGCCGGGC-GGCg -3'
miRNA:   3'- -CCGaa-GUGGAUGCGC--UGGUUCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 2817 0.67 0.720453
Target:  5'- cGCUcCACCUGCGCcucGACCucguuugcgcGCuGGCg -3'
miRNA:   3'- cCGAaGUGGAUGCG---CUGGuu--------CGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 2955 0.68 0.688249
Target:  5'- cGGCcaUCGCC-ACGcCGAUCGcGUAGGCc -3'
miRNA:   3'- -CCGa-AGUGGaUGC-GCUGGUuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 2961 0.66 0.820435
Target:  5'- gGGCgggCACUcACGCuGCCcGGCAucgGGCa -3'
miRNA:   3'- -CCGaa-GUGGaUGCGcUGGuUCGU---CCG- -5'
23862 5' -54.3 NC_005262.1 + 3729 0.66 0.792022
Target:  5'- gGGCcugCGCCUggauggguuccGCGCGGCU---CAGGCg -3'
miRNA:   3'- -CCGaa-GUGGA-----------UGCGCUGGuucGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 3822 0.66 0.820435
Target:  5'- cGGgUgCAUgcGCGCcuGAUCGAGCGGGCg -3'
miRNA:   3'- -CCgAaGUGgaUGCG--CUGGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 4435 0.67 0.751874
Target:  5'- gGGCUUCACg-GgGCGGCUc--CGGGCg -3'
miRNA:   3'- -CCGAAGUGgaUgCGCUGGuucGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 4540 0.68 0.666494
Target:  5'- cGUUUCGcuCCUGCGCGugCuGAGCGuGCa -3'
miRNA:   3'- cCGAAGU--GGAUGCGCugG-UUCGUcCG- -5'
23862 5' -54.3 NC_005262.1 + 4544 0.73 0.400675
Target:  5'- gGGCUUCAUCgUGCGCGcgcggcgcaucucgcGCCAgcGGCGGcGCu -3'
miRNA:   3'- -CCGAAGUGG-AUGCGC---------------UGGU--UCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 4821 0.72 0.473824
Target:  5'- uGGUUUCGCCgGCGCGAC---GCAGuGCc -3'
miRNA:   3'- -CCGAAGUGGaUGCGCUGguuCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 4844 0.66 0.801672
Target:  5'- cGGCUgguucgaCugCUGCGCGccgACCGAGaAGcGCg -3'
miRNA:   3'- -CCGAa------GugGAUGCGC---UGGUUCgUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 5045 0.68 0.677393
Target:  5'- cGGCcggCGCCUGauCGG-CGGGCAGGCc -3'
miRNA:   3'- -CCGaa-GUGGAUgcGCUgGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 5078 0.66 0.801672
Target:  5'- cGGCggCGCgUGCGacCGGCUcGGCGGuGCg -3'
miRNA:   3'- -CCGaaGUGgAUGC--GCUGGuUCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 5196 0.71 0.514917
Target:  5'- gGGCgcgGCCgGCGCGACCGAG--GGCg -3'
miRNA:   3'- -CCGaagUGGaUGCGCUGGUUCguCCG- -5'
23862 5' -54.3 NC_005262.1 + 6124 0.67 0.731028
Target:  5'- cGGCacagUCGCCUcgauguGCGCGGCCGGGauuuuGCu -3'
miRNA:   3'- -CCGa---AGUGGA------UGCGCUGGUUCguc--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.